Whole genome sequencing and microsatellite analysis of the Plasmodium falciparum E5 NF54 strain show that the var, rifin and stevor gene families follow Mendelian inheritance

por Bruske, Ellen, Otto, Thomas D., Frank, Matthias
Publicado 2018

peaks2utr: a robust Python tool for the annotation of 3′ UTRs

por Haese-Hill, William, Crouch, Kathryn, Otto, Thomas D
Publicado 2023

Improving draft assemblies by iterative mapping and assembly of short reads to eliminate gaps

por Tsai, Isheng J, Otto, Thomas D, Berriman, Matthew
Publicado 2010

Iterative Correction of Reference Nucleotides (iCORN) using second generation sequencing technology

por Otto, Thomas D., Sanders, Mandy, Berriman, Matthew, Newbold, Chris
Publicado 2010

A comprehensive evaluation of assembly scaffolding tools

por Hunt, Martin, Newbold, Chris, Berriman, Matthew, Otto, Thomas D
Publicado 2014

Using topic modeling to detect cellular crosstalk in scRNA-seq

por Pancheva, Alexandrina, Wheadon, Helen, Rogers, Simon, Otto, Thomas D.
Publicado 2022

RATT: Rapid Annotation Transfer Tool

por Otto, Thomas D., Dillon, Gary P., Degrave, Wim S., Berriman, Matthew
Publicado 2011

Varia: a tool for prediction, analysis and visualisation of variable genes

por Mackenzie, Gavin, Jensen, Rasmus W., Lavstsen, Thomas, Otto, Thomas D.
Publicado 2022

BamView: viewing mapped read alignment data in the context of the reference sequence

por Carver, Tim, Böhme, Ulrike, Otto, Thomas D., Parkhill, Julian, Berriman, Matthew
Publicado 2010

ABACAS: algorithm-based automatic contiguation of assembled sequences

por Assefa, Samuel, Keane, Thomas M., Otto, Thomas D., Newbold, Chris, Berriman, Matthew
Publicado 2009

Progression of the canonical reference malaria parasite genome from 2002–2019

por Böhme, Ulrike, Otto, Thomas D., Sanders, Mandy, Newbold, Chris I., Berriman, Matthew
Publicado 2019

REAPR: a universal tool for genome assembly evaluation

por Hunt, Martin, Kikuchi, Taisei, Sanders, Mandy, Newbold, Chris, Berriman, Matthew, Otto, Thomas D
Publicado 2013

The Impact of Malaria Parasites on Dendritic Cell–T Cell Interaction

por Osii, Rowland S., Otto, Thomas D., Garside, Paul, Ndungu, Francis M., Brewer, James M.
Publicado 2020

AnEnPi: identification and annotation of analogous enzymes

por Otto, Thomas D, Guimarães, Ana Carolina R, Degrave, Wim M, de Miranda, Antonio B
Publicado 2008

Single-cell transcriptomic analysis of bloodstream Trypanosoma brucei reconstructs cell cycle progression and developmental quorum sensing

por Briggs, Emma M., Rojas, Federico, McCulloch, Richard, Matthews, Keith R., Otto, Thomas D.
Publicado 2021

Application of single-cell transcriptomics to kinetoplastid research

por Briggs, Emma M., Warren, Felix S. L., Matthews, Keith R., McCulloch, Richard, Otto, Thomas D.
Publicado 2021

ReRep: Computational detection of repetitive sequences in genome survey sequences (GSS)

por Otto, Thomas D, Gomes, Leonardo HF, Alves-Ferreira, Marcelo, de Miranda, Antonio B, Degrave, Wim M
Publicado 2008

BamView: visualizing and interpretation of next-generation sequencing read alignments

por Carver, Tim, Harris, Simon R., Otto, Thomas D., Berriman, Matthew, Parkhill, Julian, McQuillan, Jacqueline A.
Publicado 2013

Circlator: automated circularization of genome assemblies using long sequencing reads

por Hunt, Martin, Silva, Nishadi De, Otto, Thomas D., Parkhill, Julian, Keane, Jacqueline A., Harris, Simon R.
Publicado 2015

Transcriptional and genomic parallels between the monoxenous parasite Herpetomonas muscarum and Leishmania

por Sloan, Megan A., Brooks, Karen, Otto, Thomas D., Sanders, Mandy J., Cotton, James A., Ligoxygakis, Petros
Publicado 2019