The importance of thermodynamics for molecular systems, and the importance of molecular systems for thermodynamics

por Ouldridge, Thomas E.
Publicado 2017

Designing the optimal bit: balancing energetic cost, speed and reliability

por Deshpande, Abhishek, Gopalkrishnan, Manoj, Ouldridge, Thomas E., Jones, Nick S.
Publicado 2017

Quasi-robust control of biochemical reaction networks via stochastic morphing

por Plesa, Tomislav, Stan, Guy-Bart, Ouldridge, Thomas E., Bae, Wooli
Publicado 2021

A Primer on the oxDNA Model of DNA: When to Use it, How to Simulate it and How to Interpret the Results

por Sengar, A., Ouldridge, T. E., Henrich, O., Rovigatti, L., Šulc, P.
Publicado 2021

Plectoneme tip bubbles: Coupled denaturation and writhing in supercoiled DNA

por Matek, Christian, Ouldridge, Thomas E., Doye, Jonathan P. K., Louis, Ard A.
Publicado 2015

Building an RNA-Based Toggle Switch Using Inhibitory RNA Aptamers

por Climent-Catala, Alicia, Ouldridge, Thomas E., Stan, Guy-Bart V., Bae, Wooli
Publicado 2022

DNA hybridization kinetics: zippering, internal displacement and sequence dependence

por Ouldridge, Thomas E., Šulc, Petr, Romano, Flavio, Doye, Jonathan P. K., Louis, Ard A.
Publicado 2013

Identifying Physical Causes of Apparent Enhanced Cyclization of Short DNA Molecules with a Coarse-Grained Model

por Harrison, Ryan M., Romano, Flavio, Ouldridge, Thomas E., Louis, Ard A., Doye, Jonathan P. K.
Publicado 2019

The stability and number of nucleating interactions determine DNA hybridization rates in the absence of secondary structure

por Hertel, Sophie, Spinney, Richard E, Xu, Stephanie Y, Ouldridge, Thomas E, Morris, Richard G, Lee, Lawrence K
Publicado 2022

DNA hairpins destabilize duplexes primarily by promoting melting rather than by inhibiting hybridization

por Schreck, John S., Ouldridge, Thomas E., Romano, Flavio, Šulc, Petr, Shaw, Liam P., Louis, Ard A., Doye, Jonathan P.K.
Publicado 2015

DNA bipedal motor walking dynamics: an experimental and theoretical study of the dependency on step size

por Khara, Dinesh C, Schreck, John S, Tomov, Toma E, Berger, Yaron, Ouldridge, Thomas E, Doye, Jonathan P K, Nir, Eyal
Publicado 2018

Design of hidden thermodynamic driving for non-equilibrium systems via mismatch elimination during DNA strand displacement

por Haley, Natalie E. C., Ouldridge, Thomas E., Mullor Ruiz, Ismael, Geraldini, Alessandro, Louis, Ard A., Bath, Jonathan, Turberfield, Andrew J.
Publicado 2020

On the biophysics and kinetics of toehold-mediated DNA strand displacement

por Srinivas, Niranjan, Ouldridge, Thomas E., Šulc, Petr, Schaeffer, Joseph M., Yurke, Bernard, Louis, Ard A., Doye, Jonathan P. K., Winfree, Erik
Publicado 2013

Synthetic biology and bioelectrochemical tools for electrogenetic system engineering

por Lawrence, Joshua M., Yin, Yutong, Bombelli, Paolo, Scarampi, Alberto, Storch, Marko, Wey, Laura T., Climent-Catala, Alicia, Baldwin, Geoff S., O’Hare, Danny, Howe, Christopher J., Zhang, Jenny Z., Ouldridge, Thomas E., Ledesma-Amaro, Rodrigo
Publicado 2022