Protein-Coding Genes of Helicobacter pylori Predominantly Present Purifying Selection though Many Membrane Proteins Suffer from Selection Pressure: A Proposal to Analyze Bacterial...

por Rubio, Alejandro, Pérez-Pulido, Antonio J.
Publicado 2021

E-learning strategies from a bioinformatics postgraduate programme to improve student engagement and completion rate

por Garzón, Andrés, Rubio, Alejandro, Pérez-Pulido, Antonio J
Publicado 2022

orthoFind Facilitates the Discovery of Homologous and Orthologous Proteins

por Mier, Pablo, Andrade-Navarro, Miguel A., Pérez-Pulido, Antonio J.
Publicado 2015

Automated selection of homologs to track the evolutionary history of proteins

por Mier, Pablo, Pérez-Pulido, Antonio J., Andrade-Navarro, Miguel A.
Publicado 2018

Ancient evolutionary signals of protein-coding sequences allow the discovery of new genes in the Drosophila melanogaster genome

por Casimiro-Soriguer, Carlos S., Rubio, Alejandro, Jimenez, Juan, Pérez-Pulido, Antonio J.
Publicado 2020

AnABlast: a new in silico strategy for the genome-wide search of novel genes and fossil regions

por Jimenez, Juan, Duncan, Caia D. S., Gallardo, María, Mata, Juan, Perez-Pulido, Antonio J.
Publicado 2015

Reading the Evolution of Compartmentalization in the Ribosome Assembly Toolbox: The YRG Protein Family

por Mier, Pablo, Pérez-Pulido, Antonio J., Reynaud, Emmanuel G., Andrade-Navarro, Miguel A.
Publicado 2017

Sma3s: A Three-Step Modular Annotator for Large Sequence Datasets

por Muñoz-Mérida, Antonio, Viguera, Enrique, Claros, M. Gonzalo, Trelles, Oswaldo, Pérez-Pulido, Antonio J.
Publicado 2014

CRISPR sequences are sometimes erroneously translated and can contaminate public databases with spurious proteins containing spaced repeats

por Rubio, Alejandro, Mier, Pablo, Andrade-Navarro, Miguel A, Garzón, Andrés, Jiménez, Juan, Pérez-Pulido, Antonio J
Publicado 2020

MOWServ: a web client for integration of bioinformatic resources

por Ramírez, Sergio, Muñoz-Mérida, Antonio, Karlsson, Johan, García, Maximiliano, Pérez-Pulido, Antonio J., Claros, M. Gonzalo, Trelles, Oswaldo
Publicado 2010

Classification of protein motifs based on subcellular localization uncovers evolutionary relationships at both sequence and functional levels

por Parras-Moltó, Marcos, Campos-Laborie, Francisco J, García-Diéguez, Juan, Rodríguez-Griñolo, M Rosario, Pérez-Pulido, Antonio J
Publicado 2013

Genomic analysis of the nitrate-respiring Sphingopyxis granuli (formerly Sphingomonas macrogoltabida) strain TFA

por García-Romero, Inmaculada, Pérez-Pulido, Antonio J., González-Flores, Yolanda Elisabet, Reyes-Ramírez, Francisca, Santero, Eduardo, Floriano, Belén
Publicado 2016

Influence of Agaricus bisporus establishment and fungicidal treatments on casing soil metataxonomy during mushroom cultivation

por Tello Martín, Maria Luisa, Lavega, Rebeca, Carrasco, Jaime Carrasco, Pérez, Margarita, Pérez-Pulido, Antonio J., Thon, Michael, Pérez Benito, Ernesto
Publicado 2022

Serial co-expression analysis of host factors from SARS-CoV viruses highly converges with former high-throughput screenings and proposes key regulators and co-option of cellular pa...

por Pérez-Pulido, Antonio J., Asencio-Cortés, Gualberto, Brokate-Llanos, Ana M., Brea-Calvo, Gloria, Rodríguez-Griñolo, Rosario, Garzón, Andrés, Muñoz, Manuel J.
Publicado 2020

Analysis of bacterial pangenomes reduces CRISPR dark matter and reveals strong association between membranome and CRISPR-Cas systems

por Rubio, Alejandro, Sprang, Maximilian, Garzón, Andrés, Moreno-Rodriguez, Antonio, Pachón-Ibáñez, Maria Eugenia, Pachón, Jerónimo, Andrade-Navarro, Miguel A., Pérez-Pulido, Antonio J.
Publicado 2023

Identification of O-mannosylated Virulence Factors in Ustilago maydis

por Fernández-Álvarez, Alfonso, Marín-Menguiano, Miriam, Lanver, Daniel, Jiménez-Martín, Alberto, Elías-Villalobos, Alberto, Pérez-Pulido, Antonio J., Kahmann, Regine, Ibeas, José I.
Publicado 2012

Pangenome of Acinetobacter baumannii uncovers two groups of genomes, one of them with genes involved in CRISPR/Cas defence systems associated with the absence of plasmids and exclu...

por Mangas, Eugenio L., Rubio, Alejandro, Álvarez-Marín, Rocío, Labrador-Herrera, Gema, Pachón, Jerónimo, Pachón-Ibáñez, María Eugenia, Divina, Federico, Pérez-Pulido, Antonio J.
Publicado 2019

Multiple Genome Sequences of Lactobacillus pentosus Strains Isolated from Biofilms on the Skin of Fermented Green Table Olives

por Calero-Delgado, Beatriz, Pérez-Pulido, Antonio J., Benítez-Cabello, Antonio, Martín-Platero, Antonio M., Casimiro-Soriguer, Carlos S., Martínez-Bueno, Manuel, Arroyo-López, Francisco Noé, Jiménez Díaz, Rufino
Publicado 2019

PlantFuncSSR: Integrating First and Next Generation Transcriptomics for Mining of SSR-Functional Domains Markers

por Sablok, Gaurav, Pérez-Pulido, Antonio J., Do, Thac, Seong, Tan Y., Casimiro-Soriguer, Carlos S., La Porta, Nicola, Ralph, Peter J., Squartini, Andrea, Muñoz-Merida, Antonio, Harikrishna, Jennifer A.
Publicado 2016

Virulence role of the outer membrane protein CarO in carbapenem-resistant Acinetobacter baumannii

por Labrador-Herrera, Gema, Pérez-Pulido, Antonio J., Álvarez-Marín, Rocío, Casimiro-Soriguer, Carlos S., Cebrero-Cangueiro, Tania, Morán-Barrio, Jorgelina, Pachón, Jerónimo, Viale, Alejandro M., Pachón-Ibáñez, María Eugenia
Publicado 2020