Future Prospects of Spectral Clustering Approaches in Proteomics

por Perez‐Riverol, Yasset, Vizcaíno, Juan Antonio, Griss, Johannes
Publicado 2018

Open source libraries and frameworks for biological data visualisation: A guide for developers

por Wang, Rui, Perez-Riverol, Yasset, Hermjakob, Henning, Vizcaíno, Juan Antonio
Publicado 2015

Identifying novel biomarkers through data mining—A realistic scenario?

por Griss, Johannes, Perez‐Riverol, Yasset, Hermjakob, Henning, Vizcaíno, Juan Antonio
Publicado 2015

Making proteomics data accessible and reusable: Current state of proteomics databases and repositories

por Perez-Riverol, Yasset, Alpi, Emanuele, Wang, Rui, Hermjakob, Henning, Vizcaíno, Juan Antonio
Publicado 2015

Accurate estimation of isoelectric point of protein and peptide based on amino acid sequences

por Audain, Enrique, Ramos, Yassel, Hermjakob, Henning, Flower, Darren R., Perez-Riverol, Yasset
Publicado 2016

LFQ-Based Peptide and Protein Intensity Differential Expression Analysis

por Bai, Mingze, Deng, Jingwen, Dai, Chengxin, Pfeuffer, Julianus, Sachsenberg, Timo, Perez-Riverol, Yasset
Publicado 2023

Accurate and fast feature selection workflow for high-dimensional omics data

por Perez-Riverol, Yasset, Kuhn, Max, Vizcaíno, Juan Antonio, Hitz, Marc-Phillip, Audain, Enrique
Publicado 2017

JBioWH: an open-source Java framework for bioinformatics data integration

por Vera, Roberto, Perez-Riverol, Yasset, Perez, Sonia, Ligeti, Balázs, Kertész-Farkas, Attila, Pongor, Sándor
Publicado 2013

Open source libraries and frameworks for mass spectrometry based proteomics: A developer's perspective()

por Perez-Riverol, Yasset, Wang, Rui, Hermjakob, Henning, Müller, Markus, Vesada, Vladimir, Vizcaíno, Juan Antonio
Publicado 2014

lesSDRF is more: maximizing the value of proteomics data through streamlined metadata annotation

por Claeys, Tine, Van Den Bossche, Tim, Perez-Riverol, Yasset, Gevaert, Kris, Vizcaíno, Juan Antonio, Martens, Lennart
Publicado 2023

On best practices in the development of bioinformatics software

por Leprevost, Felipe da Veiga, Barbosa, Valmir C., Francisco, Eduardo L., Perez-Riverol, Yasset, Carvalho, Paulo C.
Publicado 2014

OLS Client and OLS Dialog: Open Source Tools to Annotate Public Omics Datasets

por Perez‐Riverol, Yasset, Ternent, Tobias, Koch, Maximilian, Barsnes, Harald, Vrousgou, Olga, Jupp, Simon, Vizcaíno, Juan Antonio
Publicado 2017

Spectral Clustering Improves Label-Free Quantification of Low-Abundant Proteins

por Griss, Johannes, Stanek, Florian, Hudecz, Otto, Dürnberger, Gerhard, Perez-Riverol, Yasset, Vizcaíno, Juan Antonio, Mechtler, Karl
Publicado 2019

ms-data-core-api: an open-source, metadata-oriented library for computational proteomics

por Perez-Riverol, Yasset, Uszkoreit, Julian, Sanchez, Aniel, Ternent, Tobias, del Toro, Noemi, Hermjakob, Henning, Vizcaíno, Juan Antonio, Wang, Rui
Publicado 2015

Generation of ENSEMBL-based proteogenomics databases boosts the identification of non-canonical peptides

por Umer, Husen M, Audain, Enrique, Zhu, Yafeng, Pfeuffer, Julianus, Sachsenberg, Timo, Lehtiö, Janne, Branca, Rui M, Perez-Riverol, Yasset
Publicado 2021

The omics discovery REST interface

por Dass, Gaurhari, Vu, Manh-Tu, Xu, Pan, Audain, Enrique, Hitz, Marc-Phillip, Grüning, Björn A, Hermjakob, Henning, Perez-Riverol, Yasset
Publicado 2020

An integrated landscape of protein expression in human cancer

por Jarnuczak, Andrew F., Najgebauer, Hanna, Barzine, Mitra, Kundu, Deepti J., Ghavidel, Fatemeh, Perez-Riverol, Yasset, Papatheodorou, Irene, Brazma, Alvis, Vizcaíno, Juan Antonio
Publicado 2021

BioContainers Registry: searching bioinformatics and proteomics tools, packages, and containers

por Bai, Jingwen, Bandla, Chakradhar, Guo, Jiaxin, Alvarez, Roberto Vera, Bai, Mingze, Vizcaíno, Juan Antonio, Moreno, Pablo, Grüning, Björn, Sallou, Olivier, Perez-Riverol, Yasset
Publicado 2021

ProteomicsML: An Online Platform for Community-Curated Data sets and Tutorials for Machine Learning in Proteomics

por Rehfeldt, Tobias G., Gabriels, Ralf, Bouwmeester, Robbin, Gessulat, Siegfried, Neely, Benjamin A., Palmblad, Magnus, Perez-Riverol, Yasset, Schmidt, Tobias, Vizcaíno, Juan Antonio, Deutsch, Eric W.
Publicado 2023

Quantifying the impact of public omics data

por Perez-Riverol, Yasset, Zorin, Andrey, Dass, Gaurhari, Vu, Manh-Tu, Xu, Pan, Glont, Mihai, Vizcaíno, Juan Antonio, Jarnuczak, Andrew F., Petryszak, Robert, Ping, Peipei, Hermjakob, Henning
Publicado 2019