Robust analysis of prokaryotic pangenome gene gain and loss rates with Panstripe

por Tonkin-Hill, Gerry, Gladstone, Rebecca A., Pöntinen, Anna K., Arredondo-Alonso, Sergio, Bentley, Stephen D., Corander, Jukka
Publicado 2023

A high-throughput multiplexing and selection strategy to complete bacterial genomes

por Arredondo-Alonso, Sergio, Pöntinen, Anna K, Cléon, François, Gladstone, Rebecca A, Schürch, Anita C, Johnsen, Pål J, Samuelsen, Ørjan, Corander, Jukka
Publicado 2021

Mge-cluster: a reference-free approach for typing bacterial plasmids

por Arredondo-Alonso, Sergio, Gladstone, Rebecca A, Pöntinen, Anna K, Gama, João A, Schürch, Anita C, Lanza, Val F, Johnsen, Pål Jarle, Samuelsen, Ørjan, Tonkin-Hill, Gerry, Corander, Jukka
Publicado 2023

Strong pathogen competition in neonatal gut colonisation

por Mäklin, Tommi, Thorpe, Harry A., Pöntinen, Anna K., Gladstone, Rebecca A., Shao, Yan, Pesonen, Maiju, McNally, Alan, Johnsen, Pål J., Samuelsen, Ørjan, Lawley, Trevor D., Honkela, Antti, Corander, Jukka
Publicado 2022

Apparent nosocomial adaptation of Enterococcus faecalis predates the modern hospital era

por Pöntinen, Anna K., Top, Janetta, Arredondo-Alonso, Sergio, Tonkin-Hill, Gerry, Freitas, Ana R., Novais, Carla, Gladstone, Rebecca A., Pesonen, Maiju, Meneses, Rodrigo, Pesonen, Henri, Lees, John A., Jamrozy, Dorota, Bentley, Stephen D., Lanza, Val F., Torres, Carmen, Peixe, Luisa, Coque, Teresa M., Parkhill, Julian, Schürch, Anita C., Willems, Rob J. L., Corander, Jukka
Publicado 2021

Rapid cross-border emergence of NDM-5-producing Escherichia coli in the European Union/European Economic Area, 2012 to June 2022

por Linkevicius, Marius, Bonnin, Rémy A, Alm, Erik, Svartström, Olov, Apfalter, Petra, Hartl, Rainer, Hasman, Henrik, Roer, Louise, Räisänen, Kati, Dortet, Laurent, Pfennigwerth, Niels, Hans, Jörg B, Tóth, Ákos, Buzgó, Lilla, Cormican, Martin, Delappe, Niall, Monaco, Monica, Giufrè, Maria, Hendrickx, Antoni PA, Samuelsen, Ørjan, Pöntinen, Anna K, Caniça, Manuela, Manageiro, Vera, Oteo-Iglesias, Jesús, Pérez-Vázquez, María, Westmo, Karin, Mäkitalo, Barbro, Palm, Daniel, Monnet, Dominique L, Kohlenberg, Anke
Publicado 2023

Evolutionary and functional history of the Escherichia coli K1 capsule

por Arredondo-Alonso, Sergio, Blundell-Hunter, George, Fu, Zuyi, Gladstone, Rebecca A., Fillol-Salom, Alfred, Loraine, Jessica, Cloutman-Green, Elaine, Johnsen, Pål J., Samuelsen, Ørjan, Pöntinen, Anna K., Cléon, François, Chavez-Bueno, Susana, De la Cruz, Miguel A., Ares, Miguel A., Vongsouvath, Manivanh, Chmielarczyk, Agnieszka, Horner, Carolyne, Klein, Nigel, McNally, Alan, Reis, Joice N., Penadés, José R., Thomson, Nicholas R., Corander, Jukka, Taylor, Peter W., McCarthy, Alex J.
Publicado 2023