Measuring Dissociation Rate Constants of Protein Complexes through Subunit Exchange: Experimental Design and Theoretical Modeling

por Pan, Chongle
Publicado 2011

Explainable multi-task learning improves the parallel estimation of polygenic risk scores for many diseases through shared genetic basis

por Badré, Adrien, Pan, Chongle
Publicado 2023

LINA: A Linearizing Neural Network Architecture for Accurate First-Order and Second-Order Interpretations

por BADRÉ, ADRIEN, PAN, CHONGLE
Publicado 2022

Sigma: Strain-level inference of genomes from metagenomic analysis for biosurveillance

por Ahn, Tae-Hyuk, Chai, Juanjuan, Pan, Chongle
Publicado 2015

Functional phylogenomics analysis of bacteria and archaea using consistent genome annotation with UniFam

por Chai, Juanjuan, Kora, Guruprasad, Ahn, Tae-Hyuk, Hyatt, Doug, Pan, Chongle
Publicado 2014

Phenylpropanoid Biosynthesis Gene Expression Precedes Lignin Accumulation During Shoot Development in Lowland and Upland Switchgrass Genotypes

por Saha, Prasenjit, Lin, Fan, Thibivilliers, Sandra, Xiong, Yi, Pan, Chongle, Bartley, Laura E.
Publicado 2021

Elucidation of Zymomonas mobilis physiology and stress responses by quantitative proteomics and transcriptomics

por Yang, Shihui, Pan, Chongle, Hurst, Gregory B., Dice, Lezlee, Davison, Brian H., Brown, Steven D.
Publicado 2014

Using Apache Spark on genome assembly for scalable overlap-graph reduction

por Paul, Alexander J., Lawrence, Dylan, Song, Myoungkyu, Lim, Seung-Hwan, Pan, Chongle, Ahn, Tae-Hyuk
Publicado 2019

Phytoplankton exudates and lysates support distinct microbial consortia with specialized metabolic and ecophysiological traits

por Kieft, Brandon, Li, Zhou, Bryson, Samuel, Hettich, Robert L., Pan, Chongle, Mayali, Xavier, Mueller, Ryan S.
Publicado 2021

MetaLP: An integrative linear programming method for protein inference in metaproteomics

por Feng, Shichao, Ji, Hong-Long, Wang, Huan, Zhang, Bailu, Sterzenbach, Ryan, Pan, Chongle, Guo, Xuan
Publicado 2022

Quantitative Tracking of Isotope Flows in Proteomes of Microbial Communities

por Pan, Chongle, Fischer, Curt R., Hyatt, Doug, Bowen, Benjamin P., Hettich, Robert L., Banfield, Jillian F.
Publicado 2011

Proteomic Stable Isotope Probing Reveals Taxonomically Distinct Patterns in Amino Acid Assimilation by Coastal Marine Bacterioplankton

por Bryson, Samuel, Li, Zhou, Pett-Ridge, Jennifer, Hettich, Robert L., Mayali, Xavier, Pan, Chongle, Mueller, Ryan S.
Publicado 2016

Islet autoantibody seroconversion in type-1 diabetes is associated with metagenome-assembled genomes in infant gut microbiomes

por Zhang, Li, Jonscher, Karen R., Zhang, Zuyuan, Xiong, Yi, Mueller, Ryan S., Friedman, Jacob E., Pan, Chongle
Publicado 2022

Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities

por Marlow, Jeffrey J., Skennerton, Connor T., Li, Zhou, Chourey, Karuna, Hettich, Robert L., Pan, Chongle, Orphan, Victoria J.
Publicado 2016

Microbial Community Structure–Function Relationships in Yaquina Bay Estuary Reveal Spatially Distinct Carbon and Nitrogen Cycling Capacities

por Kieft, Brandon, Li, Zhou, Bryson, Samuel, Crump, Byron C., Hettich, Robert, Pan, Chongle, Mayali, Xavier, Mueller, Ryan S.
Publicado 2018

Sipros Ensemble improves database searching and filtering for complex metaproteomics

por Guo, Xuan, Li, Zhou, Yao, Qiuming, Mueller, Ryan S, Eng, Jimmy K, Tabb, David L, Hervey, William Judson, Pan, Chongle
Publicado 2018

Phenotype Fingerprinting Suggests the Involvement of Single-Genotype Consortia in Degradation of Aromatic Compounds by Rhodopseudomonas palustris

por Karpinets, Tatiana V., Pelletier, Dale A., Pan, Chongle, Uberbacher, Edward C., Melnichenko, Galina V., Hettich, Robert L., Samatova, Nagiza F.
Publicado 2009

Metagenome Sequencing of a Coastal Marine Microbial Community from Monterey Bay, California

por Mueller, Ryan S., Bryson, Sam, Kieft, Brandon, Li, Zhou, Pett-Ridge, Jennifer, Chavez, Francisco, Hettich, Robert L., Pan, Chongle, Mayali, Xavier
Publicado 2015

Phylogenetically conserved resource partitioning in the coastal microbial loop

por Bryson, Samuel, Li, Zhou, Chavez, Francisco, Weber, Peter K, Pett-Ridge, Jennifer, Hettich, Robert L, Pan, Chongle, Mayali, Xavier, Mueller, Ryan S
Publicado 2017

Impact of Pretreated Switchgrass and Biomass Carbohydrates on Clostridium thermocellum ATCC 27405 Cellulosome Composition: A Quantitative Proteomic Analysis

por Raman, Babu, Pan, Chongle, Hurst, Gregory B., Rodriguez, Miguel, McKeown, Catherine K., Lankford, Patricia K., Samatova, Nagiza F., Mielenz, Jonathan R.
Publicado 2009