On the Way to Understanding the Interplay between the RNA Structure and Functions in Cells: A Genome-Wide Perspective

por Andrzejewska, Angelika, Zawadzka, Małgorzata, Pachulska-Wieczorek, Katarzyna
Publicado 2020

New, extended hairpin form of the TAR-2 RNA domain points to the structural polymorphism at the 5′ end of the HIV-2 leader RNA

por Pachulska-Wieczorek, Katarzyna, Purzycka, Katarzyna J., Adamiak, Ryszard W.
Publicado 2006

The in vitro loose dimer structure and rearrangements of the HIV-2 leader RNA

por Purzycka, Katarzyna J., Pachulska-Wieczorek, Katarzyna, Adamiak, Ryszard W.
Publicado 2011

Similarities and differences in the nucleic acid chaperone activity of HIV-2 and HIV-1 nucleocapsid proteins in vitro

por Pachulska-Wieczorek, Katarzyna, Stefaniak, Agnieszka K, Purzycka, Katarzyna J
Publicado 2014

Determinants of Genomic RNA Encapsidation in the Saccharomyces cerevisiae Long Terminal Repeat Retrotransposons Ty1 and Ty3

por Pachulska-Wieczorek, Katarzyna, Le Grice, Stuart F.J., Purzycka, Katarzyna J.
Publicado 2016

RNAthor – fast, accurate normalization, visualization and statistical analysis of RNA probing data resolved by capillary electrophoresis

por Gumna, Julita, Zok, Tomasz, Figurski, Kacper, Pachulska-Wieczorek, Katarzyna, Szachniuk, Marta
Publicado 2020

RNA Binding Properties of the Ty1 LTR-Retrotransposon Gag Protein

por Gumna, Julita, Andrzejewska-Romanowska, Angelika, Garfinkel, David J., Pachulska-Wieczorek, Katarzyna
Publicado 2021

In vivo structure of the Ty1 retrotransposon RNA genome

por Andrzejewska, Angelika, Zawadzka, Małgorzata, Gumna, Julita, Garfinkel, David J, Pachulska-Wieczorek, Katarzyna
Publicado 2021

The matrix domain contributes to the nucleic acid chaperone activity of HIV-2 Gag

por Pachulska-Wieczorek, Katarzyna, Błaszczyk, Leszek, Biesiada, Marcin, Adamiak, Ryszard W., Purzycka, Katarzyna J.
Publicado 2016

Cell Compartment-Specific Folding of Ty1 Long Terminal Repeat Retrotransposon RNA Genome

por Zawadzka, Małgorzata, Andrzejewska-Romanowska, Angelika, Gumna, Julita, Garfinkel, David J., Pachulska-Wieczorek, Katarzyna
Publicado 2022

Retroviral-like determinants and functions required for dimerization of Ty1 retrotransposon RNA

por Gumna, Julita, Purzycka, Katarzyna J., Ahn, Hyo Won, Garfinkel, David J., Pachulska-Wieczorek, Katarzyna
Publicado 2019

Ty1 retrovirus-like element Gag contains overlapping restriction factor and nucleic acid chaperone functions

por Nishida, Yuri, Pachulska-Wieczorek, Katarzyna, Błaszczyk, Leszek, Saha, Agniva, Gumna, Julita, Garfinkel, David J., Purzycka, Katarzyna J.
Publicado 2015

The silencing of ets-4 mRNA relies on the functional cooperation between REGE-1/Regnase-1 and RLE-1/Roquin-1

por Sobańska, Daria, Komur, Alicja A, Chabowska-Kita, Agnieszka, Gumna, Julita, Kumari, Pooja, Pachulska-Wieczorek, Katarzyna, Ciosk, Rafal
Publicado 2022

A normal genetic variation modulates synaptic MMP‐9 protein levels and the severity of schizophrenia symptoms

por Lepeta, Katarzyna, Purzycka, Katarzyna J, Pachulska‐Wieczorek, Katarzyna, Mitjans, Marina, Begemann, Martin, Vafadari, Behnam, Bijata, Krystian, Adamiak, Ryszard W, Ehrenreich, Hannelore, Dziembowska, Magdalena, Kaczmarek, Leszek
Publicado 2017

Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition

por Kumari, Pooja, Aeschimann, Florian, Gaidatzis, Dimos, Keusch, Jeremy J., Ghosh, Pritha, Neagu, Anca, Pachulska-Wieczorek, Katarzyna, Bujnicki, Janusz M., Gut, Heinz, Großhans, Helge, Ciosk, Rafal
Publicado 2018

Computational Pipeline for Reference-Free Comparative Analysis of RNA 3D Structures Applied to SARS-CoV-2 UTR Models

por Gumna, Julita, Antczak, Maciej, Adamiak, Ryszard W., Bujnicki, Janusz M., Chen, Shi-Jie, Ding, Feng, Ghosh, Pritha, Li, Jun, Mukherjee, Sunandan, Nithin, Chandran, Pachulska-Wieczorek, Katarzyna, Ponce-Salvatierra, Almudena, Popenda, Mariusz, Sarzynska, Joanna, Wirecki, Tomasz, Zhang, Dong, Zhang, Sicheng, Zok, Tomasz, Westhof, Eric, Miao, Zhichao, Szachniuk, Marta, Rybarczyk, Agnieszka
Publicado 2022

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

por Miao, Zhichao, Adamiak, Ryszard W., Antczak, Maciej, Batey, Robert T., Becka, Alexander J., Biesiada, Marcin, Boniecki, Michał J., Bujnicki, Janusz M., Chen, Shi-Jie, Cheng, Clarence Yu, Chou, Fang-Chieh, Ferré-D'Amaré, Adrian R., Das, Rhiju, Dawson, Wayne K., Ding, Feng, Dokholyan, Nikolay V., Dunin-Horkawicz, Stanisław, Geniesse, Caleb, Kappel, Kalli, Kladwang, Wipapat, Krokhotin, Andrey, Łach, Grzegorz E., Major, François, Mann, Thomas H., Magnus, Marcin, Pachulska-Wieczorek, Katarzyna, Patel, Dinshaw J., Piccirilli, Joseph A., Popenda, Mariusz, Purzycka, Katarzyna J., Ren, Aiming, Rice, Greggory M., Santalucia, John, Sarzynska, Joanna, Szachniuk, Marta, Tandon, Arpit, Trausch, Jeremiah J., Tian, Siqi, Wang, Jian, Weeks, Kevin M., Williams, Benfeard, Xiao, Yi, Xu, Xiaojun, Zhang, Dong, Zok, Tomasz, Westhof, Eric
Publicado 2017