Side-chain Packing Using SE(3)-Transformer

por Jindal, Akhil, Kotelnikov, Sergei, Padhorny, Dzmitry, Kozakov, Dima, Zhu, Yimin, Chowdhury, Rezaul, Vajda, Sandor
Publicado 2022

Elucidation of protein function using computational docking and hotspot analysis by ClusPro and FTMap

por Jones, George, Jindal, Akhil, Ghani, Usman, Kotelnikov, Sergei, Egbert, Megan, Hashemi, Nasser, Vajda, Sandor, Padhorny, Dzmitry, Kozakov, Dima
Publicado 2022

Scalable multiplex co-fractionation/mass spectrometry platform for accelerated protein interactome discovery

por Havugimana, Pierre C., Goel, Raghuveera Kumar, Phanse, Sadhna, Youssef, Ahmed, Padhorny, Dzmitry, Kotelnikov, Sergei, Kozakov, Dima, Emili, Andrew
Publicado 2022

Parallelized multidimensional analytic framework applied to mammary epithelial cells uncovers regulatory principles in EMT

por Paul, Indranil, Bolzan, Dante, Youssef, Ahmed, Gagnon, Keith A., Hook, Heather, Karemore, Gopal, Oliphant, Michael U. J., Lin, Weiwei, Liu, Qian, Phanse, Sadhna, White, Carl, Padhorny, Dzmitry, Kotelnikov, Sergei, Chen, Christopher S., Hu, Pingzhao, Denis, Gerald V., Kozakov, Dima, Raught, Brian, Siggers, Trevor, Wuchty, Stefan, Muthuswamy, Senthil K., Emili, Andrew
Publicado 2023

Protein folds vs. protein folding: Differing questions, different challenges

por Chen, Shi-Jie, Hassan, Mubashir, Jernigan, Robert L., Jia, Kejue, Kihara, Daisuke, Kloczkowski, Andrzej, Kotelnikov, Sergei, Kozakov, Dima, Liang, Jie, Liwo, Adam, Matysiak, Silvina, Meller, Jarek, Micheletti, Cristian, Mitchell, Julie C., Mondal, Sayantan, Nussinov, Ruth, Okazaki, Kei-ichi, Padhorny, Dzmitry, Skolnick, Jeffrey, Sosnick, Tobin R., Stan, George, Vakser, Ilya, Zou, Xiaoqin, Rose, George D.
Publicado 2022

Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2

por Hekman, Ryan M., Hume, Adam J., Goel, Raghuveera Kumar, Abo, Kristine M., Huang, Jessie, Blum, Benjamin C., Werder, Rhiannon B., Suder, Ellen L., Paul, Indranil, Phanse, Sadhna, Youssef, Ahmed, Alysandratos, Konstantinos D., Padhorny, Dzmitry, Ojha, Sandeep, Mora-Martin, Alexandra, Kretov, Dmitry, Ash, Peter E.A., Verma, Mamta, Zhao, Jian, Patten, J.J., Villacorta-Martin, Carlos, Bolzan, Dante, Perea-Resa, Carlos, Bullitt, Esther, Hinds, Anne, Tilston-Lunel, Andrew, Varelas, Xaralabos, Farhangmehr, Shaghayegh, Braunschweig, Ulrich, Kwan, Julian H., McComb, Mark, Basu, Avik, Saeed, Mohsan, Perissi, Valentina, Burks, Eric J., Layne, Matthew D., Connor, John H., Davey, Robert, Cheng, Ji-Xin, Wolozin, Benjamin L., Blencowe, Benjamin J., Wuchty, Stefan, Lyons, Shawn M., Kozakov, Dima, Cifuentes, Daniel, Blower, Michael, Kotton, Darrell N., Wilson, Andrew A., Mühlberger, Elke, Emili, Andrew
Publicado 2020

Actionable Cytopathogenic Host Responses of Human Alveolar Type 2 Cells to SARS-CoV-2

por Hekman, Ryan M., Hume, Adam J., Goel, Raghuveera Kumar, Abo, Kristine M., Huang, Jessie, Blum, Benjamin C., Werder, Rhiannon B., Suder, Ellen L., Paul, Indranil, Phanse, Sadhna, Youssef, Ahmed, Alysandratos, Konstantinos D., Padhorny, Dzmitry, Ojha, Sandeep, Mora-Martin, Alexandra, Kretov, Dmitry, Ash, Peter E.A., Verma, Mamta, Zhao, Jian, Patten, J.J., Villacorta-Martin, Carlos, Bolzan, Dante, Perea-Resa, Carlos, Bullitt, Esther, Hinds, Anne, Tilston-Lunel, Andrew, Varelas, Xaralabos, Farhangmehr, Shaghayegh, Braunschweig, Ulrich, Kwan, Julian H., McComb, Mark, Basu, Avik, Saeed, Mohsan, Perissi, Valentina, Burks, Eric J., Layne, Matthew D., Connor, John H., Davey, Robert, Cheng, Ji-Xin, Wolozin, Benjamin L., Blencowe, Benjamin J., Wuchty, Stefan, Lyons, Shawn M., Kozakov, Dima, Cifuentes, Daniel, Blower, Michael, Kotton, Darrell N., Wilson, Andrew A., Mühlberger, Elke, Emili, Andrew
Publicado 2021