easyRNASeq: a bioconductor package for processing RNA-Seq data

por Delhomme, Nicolas, Padioleau, Ismaël, Furlong, Eileen E., Steinmetz, Lars M.
Publicado 2012

XPC deficiency increases risk of hematologic malignancies through mutator phenotype and characteristic mutational signature

por Yurchenko, Andrey A., Padioleau, Ismael, Matkarimov, Bakhyt T., Soulier, Jean, Sarasin, Alain, Nikolaev, Sergey
Publicado 2020

Celiac disease T-cell epitopes from gamma-gliadins: immunoreactivity depends on the genome of origin, transcript frequency, and flanking protein variation

por Salentijn, Elma MJ, Mitea, D Cristina, Goryunova, Svetlana V, van der Meer, Ingrid M, Padioleau, Ismael, Gilissen, Luud JWJ, Koning, Frits, Smulders, Marinus JM
Publicado 2012

Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites

por Promonet, Alexy, Padioleau, Ismaël, Liu, Yaqun, Sanz, Lionel, Biernacka, Anna, Schmitz, Anne-Lyne, Skrzypczak, Magdalena, Sarrazin, Amélie, Mettling, Clément, Rowicka, Maga, Ginalski, Krzysztof, Chedin, Frédéric, Chen, Chun-Long, Lin, Yea-Lih, Pasero, Philippe
Publicado 2020

Genomic mutation landscape of skin cancers from DNA repair-deficient xeroderma pigmentosum patients

por Yurchenko, Andrey A., Rajabi, Fatemeh, Braz-Petta, Tirzah, Fassihi, Hiva, Lehmann, Alan, Nishigori, Chikako, Wang, Jinxin, Padioleau, Ismael, Gunbin, Konstantin, Panunzi, Leonardo, Morice-Picard, Fanny, Laplante, Pierre, Robert, Caroline, Kannouche, Patricia L., Menck, Carlos F. M., Sarasin, Alain, Nikolaev, Sergey I.
Publicado 2023

Comprehensive metagenomic analysis of glioblastoma reveals absence of known virus despite antiviral-like type I interferon gene response

por Cosset, Érika, Petty, Tom J, Dutoit, Valérie, Cordey, Samuel, Padioleau, Ismael, Otten-Hernandez, Patricia, Farinelli, Laurent, Kaiser, Laurent, Bruyère-Cerdan, Pascale, Tirefort, Diderik, Amar El-Dusouqui, Soraya, Nayernia, Zeynab, Krause, Karl-Heinz, Zdobnov, Evgeny M, Dietrich, Pierre-Yves, Rigal, Emmanuel, Preynat-Seauve, Olivier
Publicado 2014

Passive and active DNA methylation and the interplay with genetic variation in gene regulation

por Gutierrez-Arcelus, Maria, Lappalainen, Tuuli, Montgomery, Stephen B, Buil, Alfonso, Ongen, Halit, Yurovsky, Alisa, Bryois, Julien, Giger, Thomas, Romano, Luciana, Planchon, Alexandra, Falconnet, Emilie, Bielser, Deborah, Gagnebin, Maryline, Padioleau, Ismael, Borel, Christelle, Letourneau, Audrey, Makrythanasis, Periklis, Guipponi, Michel, Gehrig, Corinne, Antonarakis, Stylianos E, Dermitzakis, Emmanouil T
Publicado 2013

Correction: Passive and active DNA methylation and the interplay with genetic variation in gene regulation

por Gutierrez-Arcelus, Maria, Lappalainen, Tuuli, Montgomery, Stephen B, Buil, Alfonso, Ongen, Halit, Yurovsky, Alisa, Bryois, Julien, Giger, Thomas, Romano, Luciana, Planchon, Alexandra, Falconnet, Emilie, Bielser, Deborah, Gagnebin, Maryline, Padioleau, Ismael, Borel, Christelle, Letourneau, Audrey, Makrythanasis, Periklis, Guipponi, Michel, Gehrig, Corinne, Antonarakis, Stylianos E, Dermitzakis, Emmanouil T
Publicado 2013

Tissue-Specific Effects of Genetic and Epigenetic Variation on Gene Regulation and Splicing

por Gutierrez-Arcelus, Maria, Ongen, Halit, Lappalainen, Tuuli, Montgomery, Stephen B., Buil, Alfonso, Yurovsky, Alisa, Bryois, Julien, Padioleau, Ismael, Romano, Luciana, Planchon, Alexandra, Falconnet, Emilie, Bielser, Deborah, Gagnebin, Maryline, Giger, Thomas, Borel, Christelle, Letourneau, Audrey, Makrythanasis, Periklis, Guipponi, Michel, Gehrig, Corinne, Antonarakis, Stylianos E., Dermitzakis, Emmanouil T.
Publicado 2015

Integrative Pan-Cancer Genomic and Transcriptomic Analyses of Refractory Metastatic Cancer

por Pradat, Yoann, Viot, Julien, Yurchenko, Andrey A., Gunbin, Konstantin, Cerbone, Luigi, Deloger, Marc, Grisay, Guillaume, Verlingue, Loic, Scott, Véronique, Padioleau, Ismael, Panunzi, Leonardo, Michiels, Stefan, Hollebecque, Antoine, Jules-Clément, Gérôme, Mezquita, Laura, Lainé, Antoine, Loriot, Yohann, Besse, Benjamin, Friboulet, Luc, André, Fabrice, Cournède, Paul-Henry, Gautheret, Daniel, Nikolaev, Sergey I.
Publicado 2023

Frequency and Genomic Aspects of Intrinsic Resistance to Vismodegib in Locally Advanced Basal Cell Carcinoma

por Yurchenko, Andrey A., Pop, Oltin T., Ighilahriz, Meriem, Padioleau, Ismael, Rajabi, Fatemeh, Sharpe, Hayley J., Poulalhon, Nicolas, Dreno, Brigitte, Khammari, Amir, Delord, Marc, Alberti, Antonio, Soufir, Nadem, Battistella, Maxime, Mourah, Samia, Bouquet, Fanny, Savina, Ariel, Besse, Andrej, Mendez-Lopez, Max, Grange, Florent, Monestier, Sandrine, Mortier, Laurent, Meyer, Nicolas, Dutriaux, Caroline, Robert, Caroline, Saiag, Philippe, Herms, Florian, Lambert, Jerome, de Sauvage, Frederic J., Dumaz, Nicolas, Flatz, Lukas, Basset-Seguin, Nicole, Nikolaev, Sergey I.
Publicado 2022

RAS mutations drive proliferative chronic myelomonocytic leukemia via a KMT2A-PLK1 axis

por Carr, Ryan M., Vorobyev, Denis, Lasho, Terra, Marks, David L., Tolosa, Ezequiel J., Vedder, Alexis, Almada, Luciana L., Yurcheko, Andrey, Padioleau, Ismael, Alver, Bonnie, Coltro, Giacomo, Binder, Moritz, Safgren, Stephanie L., Horn, Isaac, You, Xiaona, Solary, Eric, Balasis, Maria E., Berger, Kurt, Hiebert, James, Witzig, Thomas, Buradkar, Ajinkya, Graf, Temeida, Valent, Peter, Mangaonkar, Abhishek A., Robertson, Keith D., Howard, Matthew T., Kaufmann, Scott H., Pin, Christopher, Fernandez-Zapico, Martin E., Geissler, Klaus, Droin, Nathalie, Padron, Eric, Zhang, Jing, Nikolaev, Sergey, Patnaik, Mrinal M.
Publicado 2021

Transcriptome and genome sequencing uncovers functional variation in humans

por Lappalainen, Tuuli, Sammeth, Michael, Friedländer, Marc R, ‘t Hoen, Peter AC, Monlong, Jean, Rivas, Manuel A, Gonzàlez-Porta, Mar, Kurbatova, Natalja, Griebel, Thasso, Ferreira, Pedro G, Barann, Matthias, Wieland, Thomas, Greger, Liliana, van Iterson, Maarten, Almlöf, Jonas, Ribeca, Paolo, Pulyakhina, Irina, Esser, Daniela, Giger, Thomas, Tikhonov, Andrew, Sultan, Marc, Bertier, Gabrielle, MacArthur, Daniel G, Lek, Monkol, Lizano, Esther, Buermans, Henk PJ, Padioleau, Ismael, Schwarzmayr, Thomas, Karlberg, Olof, Ongen, Halit, Kilpinen, Helena, Beltran, Sergi, Gut, Marta, Kahlem, Katja, Amstislavskiy, Vyacheslav, Stegle, Oliver, Pirinen, Matti, Montgomery, Stephen B, Donnelly, Peter, McCarthy, Mark I, Flicek, Paul, Strom, Tim M, Lehrach, Hans, Schreiber, Stefan, Sudbrak, Ralf, Carracedo, Ángel, Antonarakis, Stylianos E, Häsler, Robert, Syvänen, Ann-Christine, van Ommen, Gert-Jan, Brazma, Alvis, Meitinger, Thomas, Rosenstiel, Philip, Guigó, Roderic, Gut, Ivo G, Estivill, Xavier, Dermitzakis, Emmanouil T
Publicado 2013