Rapid multi-locus sequence typing direct from uncorrected long reads using Krocus

por Page, Andrew J., Keane, Jacqueline A.
Publicado 2018

Navigating the AI frontier: ethical considerations and best practices in microbial genomics research

por Page, Andrew J., Tumelty, Niamh M., Sheppard, Samuel K.
Publicado 2023

Multi-heuristic dynamic task allocation using genetic algorithms in a heterogeneous distributed system

por Page, Andrew J., Keane, Thomas M., Naughton, Thomas J.
Publicado 2010

socru: typing of genome-level order and orientation around ribosomal operons in bacteria

por Page, Andrew J., Ainsworth, Emma V., Langridge, Gemma C.
Publicado 2020

Taxonomic resolution of the ribosomal RNA operon in bacteria: implications for its use with long-read sequencing

por de Oliveira Martins, Leonardo, Page, Andrew J, Mather, Alison E, Charles, Ian G
Publicado 2019

Non-steroidal anti-inflammatory drugs (NSAIDs) in cancer pain: A database analysis to determine recruitment feasibility for a clinical trial

por Page, Andrew J, Spencer, Katie, Mulvey, Matthew R, Laird, Barry JA, Bennett, Michael I
Publicado 2022

Comparison of classical multi-locus sequence typing software for next-generation sequencing data

por Page, Andrew J., Alikhan, Nabil-Fareed, Carleton, Heather A., Seemann, Torsten, Keane, Jacqueline A., Katz, Lee S.
Publicado 2017

Tatajuba: exploring the distribution of homopolymer tracts

por de Oliveira Martins, Leonardo, Bloomfield, Samuel, Stoakes, Emily, Grant, Andrew J, Page, Andrew J, Mather, Alison E
Publicado 2022

Stability of the Encoding Plasmids and Surface Expression of CS6 Differs in Enterotoxigenic Escherichia coli (ETEC) Encoding Different Heat-Stable (ST) Enterotoxins (STh and STp)

por Tobias, Joshua, Von Mentzer, Astrid, Loayza Frykberg, Patricia, Aslett, Martin, Page, Andrew J., Sjöling, Åsa, Svennerholm, Ann-Mari
Publicado 2016

SNP-sites: rapid efficient extraction of SNPs from multi-FASTA alignments

por Page, Andrew J., Taylor, Ben, Delaney, Aidan J., Soares, Jorge, Seemann, Torsten, Keane, Jacqueline A., Harris, Simon R.
Publicado 2016

SeroBA: rapid high-throughput serotyping of Streptococcus pneumoniae from whole genome sequence data

por Epping, Lennard, van Tonder, Andries J., Gladstone, Rebecca A., Bentley, Stephen D., Page, Andrew J., Keane, Jacqueline A.
Publicado 2018

A genome-wide analysis of Escherichia coli responses to fosfomycin using TraDIS-Xpress reveals novel roles for phosphonate degradation and phosphate transport systems

por Turner, A Keith, Yasir, Muhammad, Bastkowski, Sarah, Telatin, Andrea, Page, Andrew J, Charles, Ian G, Webber, Mark A
Publicado 2020

ARIBA: rapid antimicrobial resistance genotyping directly from sequencing reads

por Hunt, Martin, Mather, Alison E, Sánchez-Busó, Leonor, Page, Andrew J, Parkhill, Julian, Keane, Jacqueline A, Harris, Simon R
Publicado 2017

PlasmidTron: assembling the cause of phenotypes and genotypes from NGS data

por Page, Andrew J., Wailan, Alexander, Shao, Yan, Judge, Kim, Dougan, Gordon, Klemm, Elizabeth J., Thomson, Nicholas R., Keane, Jacqueline A.
Publicado 2018

Robust high-throughput prokaryote de novo assembly and improvement pipeline for Illumina data

por Page, Andrew J., De Silva, Nishadi, Hunt, Martin, Quail, Michael A., Parkhill, Julian, Harris, Simon R., Otto, Thomas D., Keane, Jacqueline A.
Publicado 2016

AlbaTraDIS: Comparative analysis of large datasets from parallel transposon mutagenesis experiments

por Page, Andrew J., Bastkowski, Sarah, Yasir, Muhammad, Turner, A. Keith, Le Viet, Thanh, Savva, George M., Webber, Mark A., Charles, Ian G.
Publicado 2020

Invasive atypical non-typhoidal Salmonella serovars in The Gambia

por Kanteh, Abdoulie, Sesay, Abdul Karim, Alikhan, Nabil-Fareed, Ikumapayi, Usman Nurudeen, Salaudeen, Rasheed, Manneh, Jarra, Olatunji, Yekini, Page, Andrew J., Mackenzie, Grant
Publicado 2021

Long-read sequencing for identification of insertion sites in large transposon mutant libraries

por Yasir, Muhammad, Turner, A. Keith, Lott, Martin, Rudder, Steven, Baker, David, Bastkowski, Sarah, Page, Andrew J., Webber, Mark A., Charles, Ian G.
Publicado 2022

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

por Croucher, Nicholas J., Page, Andrew J., Connor, Thomas R., Delaney, Aidan J., Keane, Jacqueline A., Bentley, Stephen D., Parkhill, Julian, Harris, Simon R.
Publicado 2015

Long-read-sequenced reference genomes of the seven major lineages of enterotoxigenic Escherichia coli (ETEC) circulating in modern time

por von Mentzer, Astrid, Blackwell, Grace A., Pickard, Derek, Boinett, Christine J., Joffré, Enrique, Page, Andrew J., Svennerholm, Ann-Mari, Dougan, Gordon, Sjöling, Åsa
Publicado 2021