The Genetic and Mechanistic Basis for Variation in Gene Regulation

por Pai, Athma A., Pritchard, Jonathan K., Gilad, Yoav
Publicado 2015

Editorial: Alternative Polyadenylation in Development and Disease

por Pai, Athma A., Li, Yang I., Provero, Paolo
Publicado 2022

Challenges in identifying mRNA transcript starts and ends from long-read sequencing data

por Calvo-Roitberg, Ezequiel, Daniels, Rachel F., Pai, Athma A.
Publicado 2023

RNA-seq: impact of RNA degradation on transcript quantification

por Gallego Romero, Irene, Pai, Athma A, Tung, Jenny, Gilad, Yoav
Publicado 2014

Noisy Splicing Drives mRNA Isoform Diversity in Human Cells

por Pickrell, Joseph K., Pai, Athma A., Gilad, Yoav, Pritchard, Jonathan K.
Publicado 2010

A Genome-Wide Study of DNA Methylation Patterns and Gene Expression Levels in Multiple Human and Chimpanzee Tissues

por Pai, Athma A., Bell, Jordana T., Marioni, John C., Pritchard, Jonathan K., Gilad, Yoav
Publicado 2011

Numerous recursive sites contribute to accuracy of splicing in long introns in flies

por Pai, Athma A., Paggi, Joseph M., Yan, Paul, Adelman, Karen, Burge, Christopher B.
Publicado 2018

The kinetics of pre-mRNA splicing in the Drosophila genome and the influence of gene architecture

por Pai, Athma A, Henriques, Telmo, McCue, Kayla, Burkholder, Adam, Adelman, Karen, Burge, Christopher B
Publicado 2017

Bayesian nonparametric discovery of isoforms and individual specific quantification

por Aguiar, Derek, Cheng, Li-Fang, Dumitrascu, Bianca, Mordelet, Fantine, Pai, Athma A., Engelhardt, Barbara E.
Publicado 2018

High-throughput analysis of ANRIL circRNA isoforms in human pancreatic islets

por MacMillan, Hannah J., Kong, Yahui, Calvo-Roitberg, Ezequiel, Alonso, Laura C., Pai, Athma A.
Publicado 2022

Dissecting the Within-Africa Ancestry of Populations of African Descent in the Americas

por Stefflova, Klara, Dulik, Matthew C., Barnholtz-Sloan, Jill S., Pai, Athma A., Walker, Amy H., Rebbeck, Timothy R.
Publicado 2011

Widespread occurrence of hybrid internal-terminal exons in human transcriptomes

por Fiszbein, Ana, McGurk, Michael, Calvo-Roitberg, Ezequiel, Kim, GyeungYun, Burge, Christopher B., Pai, Athma A.
Publicado 2022

Effect of read-mapping biases on detecting allele-specific expression from RNA-sequencing data

por Degner, Jacob F., Marioni, John C., Pai, Athma A., Pickrell, Joseph K., Nkadori, Everlyne, Gilad, Yoav, Pritchard, Jonathan K.
Publicado 2009

Environmental perturbations lead to extensive directional shifts in RNA processing

por Richards, Allison L., Watza, Donovan, Findley, Anthony, Alazizi, Adnan, Wen, Xiaoquan, Pai, Athma A., Pique-Regi, Roger, Luca, Francesca
Publicado 2017

The combination of a genome-wide association study of lymphocyte count and analysis of gene expression data reveals novel asthma candidate genes

por Cusanovich, Darren A., Billstrand, Christine, Zhou, Xiang, Chavarria, Claudia, De Leon, Sherryl, Michelini, Katelyn, Pai, Athma A., Ober, Carole, Gilad, Yoav
Publicado 2012

DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

por Bell, Jordana T, Pai, Athma A, Pickrell, Joseph K, Gaffney, Daniel J, Pique-Regi, Roger, Degner, Jacob F, Gilad, Yoav, Pritchard, Jonathan K
Publicado 2011

Correction: DNA methylation patterns associate with genetic and gene expression variation in HapMap cell lines

por Bell, Jordana T, Pai, Athma A, Pickrell, Joseph K, Gaffney, Daniel J, Pique-Regi, Roger, Degner, Jacob F, Gilad, Yoav, Pritchard, Jonathan K
Publicado 2011

Evaluation of Group Genetic Ancestry of Populations from Philadelphia and Dakar in the Context of Sex-Biased Admixture in the Americas

por Stefflova, Klara, Dulik, Matthew C., Pai, Athma A., Walker, Amy H., Zeigler-Johnson, Charnita M., Gueye, Serigne M., Schurr, Theodore G., Rebbeck, Timothy R.
Publicado 2009

Controls of Nucleosome Positioning in the Human Genome

por Gaffney, Daniel J., McVicker, Graham, Pai, Athma A., Fondufe-Mittendorf, Yvonne N., Lewellen, Noah, Michelini, Katelyn, Widom, Jonathan, Gilad, Yoav, Pritchard, Jonathan K.
Publicado 2012

Dissecting the regulatory architecture of gene expression QTLs

por Gaffney, Daniel J, Veyrieras, Jean-Baptiste, Degner, Jacob F, Pique-Regi, Roger, Pai, Athma A, Crawford, Gregory E, Stephens, Matthew, Gilad, Yoav, Pritchard, Jonathan K
Publicado 2012