How Next-Generation Sequencing and Multiscale Data Analysis Will Transform Infectious Disease Management

por Pak, Theodore R., Kasarskis, Andrew
Publicado 2015

Association between stopping universal SARS-CoV-2 admission testing and hospital-onset SARS-CoV-2 in England and Scotland

por Pak, Theodore, Rhee, Chanu, Klompasl, Michael
Publicado 2023

ChromoZoom: a flexible, fluid, web-based genome browser

por Pak, Theodore R., Roth, Frederick P.
Publicado 2013

1014. Assessment of racial, ethnic, and sex-based disparities in time-to-antibiotics and sepsis outcomes in a large multi-hospital cohort

por Pak, Theodore R, Sanchez, Sarimer, McKenna, Caroline S, Rhee, Chanu, Klompas, Michael
Publicado 2023

Genetic Basis of Emerging Vancomycin, Linezolid, and Daptomycin Heteroresistance in a Case of Persistent Enterococcus faecium Bacteremia

por Chacko, Kieran I., Sullivan, Mitchell J., Beckford, Colleen, Altman, Deena R., Ciferri, Brianne, Pak, Theodore R., Sebra, Robert, Kasarskis, Andrew, Hamula, Camille L., van Bakel, Harm
Publicado 2018

Genomic confirmation of vancomycin-resistant Enterococcus transmission from deceased donor to liver transplant recipient

por Bashir, Ali, Attie, Oliver, Sullivan, Mitchell, Sebra, Robert, Singh, Kavindra V., Altman, Deena, Pak, Theodore, Dutta, Jayeeta, Chacko, Kieran, Webster, Elizabeth, Lewis, Martha, Hamula, Camille, Delli Carpini, Kristin W., Murray, Barbara E., Kasarskis, Andrew, van Bakel, Harm, Huprikar, Shirish
Publicado 2017

2476. Universal detection of healthcare-related bacterial transmissions using de novo assembly with short-read whole genome sequencing

por Pak, Theodore R, Baker, Meghan, McSweeney, Rebecca, Sands, Kenneth E, Moody, Julia, Sljivo, Selsebil, Isaacs, Amanda, Septimus, Edward J, Coady, Micaela H, Poland, Russell, Blanchard, Eunice, Carver, Brandon, Smith, Kimberly N, McLean, Laura E, Guy, Jeffrey, Huang, Susan S, Grad, Yonatan H
Publicado 2023

Comprehensive innate immune profiling of chikungunya virus infection in pediatric cases

por Michlmayr, Daniela, Pak, Theodore R, Rahman, Adeeb H, Amir, El‐Ad David, Kim, Eun‐Young, Kim‐Schulze, Seunghee, Suprun, Maria, Stewart, Michael G, Thomas, Guajira P, Balmaseda, Angel, Wang, Li, Zhu, Jun, Suaréz‐Fariñas, Mayte, Wolinsky, Steven M, Kasarskis, Andrew, Harris, Eva
Publicado 2018

PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks

por Berbel Caban, Ana, Pak, Theodore R., Obla, Ajay, Dupper, Amy C., Chacko, Kieran I., Fox, Lindsey, Mills, Alexandra, Ciferri, Brianne, Oussenko, Irina, Beckford, Colleen, Chung, Marilyn, Sebra, Robert, Smith, Melissa, Conolly, Sarah, Patel, Gopi, Kasarskis, Andrew, Sullivan, Mitchell J., Altman, Deena R., van Bakel, Harm
Publicado 2020

Genome Plasticity of agr-Defective Staphylococcus aureus during Clinical Infection

por Altman, Deena R., Sullivan, Mitchell J., Chacko, Kieran I., Balasubramanian, Divya, Pak, Theodore R., Sause, William E., Kumar, Krishan, Sebra, Robert, Deikus, Gintaras, Attie, Oliver, Rose, Hannah, Lewis, Martha, Fulmer, Yi, Bashir, Ali, Kasarskis, Andrew, Schadt, Eric E., Richardson, Anthony R., Torres, Victor J., Shopsin, Bo, van Bakel, Harm
Publicado 2018

A Complete Genome Screening Program of Clinical Methicillin-Resistant Staphylococcus aureus Isolates Identifies the Origin and Progression of a Neonatal Intensive Care Unit Outbrea...

por Sullivan, Mitchell J., Altman, Deena R., Chacko, Kieran I., Ciferri, Brianne, Webster, Elizabeth, Pak, Theodore R., Deikus, Gintaras, Lewis-Sandari, Martha, Khan, Zenab, Beckford, Colleen, Rendo, Angela, Samaroo, Flora, Sebra, Robert, Karam-Howlin, Ramona, Dingle, Tanis, Hamula, Camille, Bashir, Ali, Schadt, Eric, Patel, Gopi, Wallach, Frances, Kasarskis, Andrew, Gibbs, Kathleen, van Bakel, Harm
Publicado 2019

Epigenomic characterization of Clostridioides difficile finds a conserved DNA methyltransferase that mediates sporulation and pathogenesis

por Oliveira, Pedro H., Ribis, John W., Garrett, Elizabeth M., Trzilova, Dominika, Kim, Alex, Sekulovic, Ognjen, Mead, Edward A., Pak, Theodore, Zhu, Shijia, Deikus, Gintaras, Touchon, Marie, Lewis-Sandari, Martha, Beckford, Colleen, Zeitouni, Nathalie E., Altman, Deena R., Webster, Elizabeth, Oussenko, Irina, Bunyavanich, Supinda, Aggarwal, Aneel K., Bashir, Ali, Patel, Gopi, Wallach, Frances, Hamula, Camille, Huprikar, Shirish, Schadt, Eric E., Sebra, Robert, van Bakel, Harm, Kasarskis, Andrew, Tamayo, Rita, Shen, Aimee, Fang, Gang
Publicado 2019

Interpreting cancer genomes using systematic host perturbations by tumour virus proteins

por Rozenblatt-Rosen, Orit, Deo, Rahul C., Padi, Megha, Adelmant, Guillaume, Calderwood, Michael A., Rolland, Thomas, Grace, Miranda, Dricot, Amélie, Askenazi, Manor, Tavares, Maria, Pevzner, Sam, Abderazzaq, Fieda, Byrdsong, Danielle, Carvunis, Anne-Ruxandra, Chen, Alyce A., Cheng, Jingwei, Correll, Mick, Duarte, Melissa, Fan, Changyu, Feltkamp, Mariet C., Ficarro, Scott B., Franchi, Rachel, Garg, Brijesh K., Gulbahce, Natali, Hao, Tong, Holthaus, Amy M., James, Robert, Korkhin, Anna, Litovchick, Larisa, Mar, Jessica C., Pak, Theodore R., Rabello, Sabrina, Rubio, Renee, Shen, Yun, Singh, Saurav, Spangle, Jennifer M., Tasan, Murat, Wanamaker, Shelly, Webber, James T., Roecklein-Canfield, Jennifer, Johannsen, Eric, Barabási, Albert-László, Beroukhim, Rameen, Kieff, Elliott, Cusick, Michael E., Hill, David E., Münger, Karl, Marto, Jarrod A., Quackenbush, John, Roth, Frederick P., DeCaprio, James A., Vidal, Marc
Publicado 2012