779. PIDS Featured Oral Abstract: High Beta Lactam Exposure in Neonates with Bloodstream Infection Associated with Intestinal Dysbiosis and Enterococcus spp. Abundance in the Gut M...

por Hendricks, Hope, Weitkamp, Jörn-Hendrik, Pakala, Suman, Rajagopala, Seesandra, Banerjee, Ritu
Publicado 2022

Ligation‐based assay for variant typing without sequencing: Application to SARS‐CoV‐2 variants of concern

por Nelson, Dalton J., Shilts, Meghan H., Pakala, Suman B., Das, Suman R., Schmitz, Jonathan E., Haselton, Frederick R.
Publicado 2022

Nearly Complete Genome Sequences of 17 Enterovirus D68 Strains from Kansas City, Missouri, 2018

por Pakala, Suman B., Tan, Yi, Hassan, Ferdaus, Mai, Annie, Markowitz, Robert H., Shilts, Meghan H., Rajagopala, Seesandra V., Selvarangan, Rangaraj, Das, Suman R.
Publicado 2019

High-Quality Genome Assembly and Annotation for Plasmodium coatneyi, Generated Using Single-Molecule Real-Time PacBio Technology

por Chien, Jung-Ting, Pakala, Suman B., Geraldo, Juliana A., Lapp, Stacey A., Humphrey, Jay C., Barnwell, John W., Kissinger, Jessica C., Galinski, Mary R.
Publicado 2016

Species-specific transcriptomic changes upon respiratory syncytial virus infection in cotton rats

por Strickland, Britton A., Rajagopala, Seesandra V., Kamali, Arash, Shilts, Meghan H., Pakala, Suman B., Boukhvalova, Marina S., Yooseph, Shibu, Blanco, Jorge C. G., Das, Suman R.
Publicado 2022

Cross-reaction between Formosan termite (Coptotermes formosanus) proteins and cockroach allergens

por Mattison, Christopher P., Khurana, Taruna, Tarver, Matthew R., Florane, Christopher B., Grimm, Casey C., Pakala, Suman B., Cottone, Carrie B., Riegel, Claudia, Bren-Mattison, Yvette, Slater, Jay E.
Publicado 2017

Sequencing of mitochondrial genomes of nine Aspergillus and Penicillium species identifies mobile introns and accessory genes as main sources of genome size variability

por Joardar, Vinita, Abrams, Natalie F, Hostetler, Jessica, Paukstelis, Paul J, Pakala, Suchitra, Pakala, Suman B, Zafar, Nikhat, Abolude, Olukemi O, Payne, Gary, Andrianopoulos, Alex, Denning, David W, Nierman, William C
Publicado 2012

Metatranscriptomics to characterize respiratory virome, microbiome, and host response directly from clinical samples

por Rajagopala, Seesandra V., Bakhoum, Nicole G., Pakala, Suman B., Shilts, Meghan H., Rosas-Salazar, Christian, Mai, Annie, Boone, Helen H., McHenry, Rendie, Yooseph, Shibu, Halasa, Natasha, Das, Suman R.
Publicado 2021

Perturbations in small molecule synthesis uncovers an iron-responsive secondary metabolite network in Aspergillus fumigatus

por Wiemann, Philipp, Lechner, Beatrix E., Baccile, Joshua A., Velk, Thomas A., Yin, Wen-Bing, Bok, Jin Woo, Pakala, Suman, Losada, Liliana, Nierman, William C., Schroeder, Frank C., Haas, Hubertus, Keller, Nancy P.
Publicado 2014

Genetic Analysis Using an Isogenic Mating Pair of Aspergillus fumigatus Identifies Azole Resistance Genes and Lack of MAT Locus’s Role in Virulence

por Losada, Liliana, Sugui, Janyce A., Eckhaus, Michael A., Chang, Yun C., Mounaud, Stephanie, Figat, Abigail, Joardar, Vinita, Pakala, Suman B., Pakala, Suchitra, Venepally, Pratap, Fedorova, Natalie, Nierman, William C., Kwon-Chung, Kyung J.
Publicado 2015

COVID‐19 severity from Omicron and Delta SARS‐CoV‐2 variants

por Wrenn, Jesse O., Pakala, Suman B., Vestal, Grant, Shilts, Meghan H., Brown, Hunter M., Bowen, Sara M., Strickland, Britton A., Williams, Timothy, Mallal, Simon A., Jones, Ian D., Schmitz, Jonathan E., Self, Wesley H., Das, Suman R.
Publicado 2022

Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques

por Tang, Yan, Joyner, Chester J., Cabrera-Mora, Monica, Saney, Celia L., Lapp, Stacey A., Nural, Mustafa V., Pakala, Suman B., DeBarry, Jeremy D., Soderberg, Stephanie, Kissinger, Jessica C., Lamb, Tracey J., Galinski, Mary R., Styczynski, Mark P.
Publicado 2017

Correction to: Integrative analysis associates monocytes with insufficient erythropoiesis during acute Plasmodium cynomolgi malaria in rhesus macaques

por Tang, Yan, Joyner, Chester J., Cabrera-Mora, Monica, Saney, Celia L., Lapp, Stacey A., Nural, Mustafa V., Pakala, Suman B., DeBarry, Jeremy D., Soderberg, Stephanie, Kissinger, Jessica C., Lamb, Tracey J., Galinski, Mary R., Styczynski, Mark P.
Publicado 2017

Molecular signature of postmortem lung tissue from COVID-19 patients suggests distinct trajectories driving mortality

por Budhraja, Anshul, Basu, Anubhav, Gheware, Atish, Abhilash, Dasari, Rajagopala, Seesandra, Pakala, Suman, Sumit, Madhuresh, Ray, Animesh, Subramaniam, Arulselvi, Mathur, Purva, Nambirajan, Aruna, Kumar, Sachin, Gupta, Ritu, Wig, Naveet, Trikha, Anjan, Guleria, Randeep, Sarkar, Chitra, Gupta, Ishaan, Jain, Deepali
Publicado 2022

The binary protein-protein interaction landscape of Escherichia coli

por Rajagopala, Seesandra V., Sikorski, Patricia, Kumar, Ashwani, Mosca, Roberto, Vlasblom, James, Arnold, Roland, Franca-Koh, Jonathan, Pakala, Suman B., Phanse, Sadhna, Ceol, Arnaud, Häuser, Roman, Siszler, Gabriella, Wuchty, Stefan, Emili, Andrew, Babu, Mohan, Aloy, Patrick, Pieper, Rembert, Uetz, Peter
Publicado 2014

Draft Genome Sequence of the Plant-Pathogenic Soil Fungus Rhizoctonia solani Anastomosis Group 3 Strain Rhs1AP

por Cubeta, Marc A., Thomas, Elizabeth, Dean, Ralph A., Jabaji, Suha, Neate, Stephen M., Tavantzis, Stellos, Toda, Takeshi, Vilgalys, Rytas, Bharathan, Narayanaswamy, Fedorova-Abrams, Natalie, Pakala, Suman B., Pakala, Suchitra M., Zafar, Nikhat, Joardar, Vinita, Losada, Liliana, Nierman, William C.
Publicado 2014

Mucosal gene expression in response to SARS-CoV-2 is associated with early viral load

por Rajagopala, Seesandra V., Strickland, Britton A., Pakala, Suman B., Kimura, Kyle S., Shilts, Meghan H., Rosas-Salazar, Christian, Brown, Hunter M., Freeman, Michael H., Wessinger, Bronson C., Gupta, Veerain, Phillips, Elizabeth, Mallal, Simon A., Turner, Justin H., Das, Suman R.
Publicado 2022

Mucosal Gene Expression in Response to SARS-CoV-2 Is Associated with Viral Load

por Rajagopala, Seesandra V., Strickland, Britton A., Pakala, Suman B., Kimura, Kyle S., Shilts, Meghan H., Rosas-Salazar, Christian, Brown, Hunter M., Freeman, Michael H., Wessinger, Bronson C., Gupta, Veerain, Phillips, Elizabeth, Mallal, Simon A., Turner, Justin H., Das, Suman R.
Publicado 2023

Malaria disrupts the rhesus macaque gut microbiome

por Farinella, Danielle N., Kaur, Sukhpreet, Tran, ViLinh, Cabrera-Mora, Monica, Joyner, Chester J., Lapp, Stacey A., Pakala, Suman B., Nural, Mustafa V., DeBarry, Jeremy D., Kissinger, Jessica C., Jones, Dean P., Moreno, Alberto, Galinski, Mary R., Cordy, Regina Joice
Publicado 2023

Comparative transcriptomics and metabolomics in a rhesus macaque drug administration study

por Lee, Kevin J., Yin, Weiwei, Arafat, Dalia, Tang, Yan, Uppal, Karan, Tran, ViLinh, Cabrera-Mora, Monica, Lapp, Stacey, Moreno, Alberto, Meyer, Esmeralda, DeBarry, Jeremy D., Pakala, Suman, Nayak, Vishal, Kissinger, Jessica C., Jones, Dean P., Galinski, Mary, Styczynski, Mark P., Gibson, Greg
Publicado 2014