dRFEtools: dynamic recursive feature elimination for omics

por Benjamin, Kynon J M, Katipalli, Tarun, Paquola, Apuã C M
Publicado 2023

Chemical modulation of transcriptionally enriched signaling pathways to optimize the conversion of fibroblasts into neurons

por Herdy, Joseph, Schafer, Simon, Kim, Yongsung, Ansari, Zoya, Zangwill, Dina, Ku, Manching, Paquola, Apua, Lee, Hyungjun, Mertens, Jerome, Gage, Fred H
Publicado 2019

Generation of four postmortem dura-derived iPS cell lines from four control individuals with genotypic and brain-region-specific transcriptomic data available through the BrainSEQ...

por Sawada, Tomoyo, Benjamin, Kynon J.M., Brandtjen, Anna C., Tietze, Ethan, Allen, Samuel J., Paquola, Apuã C.M., Kleinman, Joel E., Hyde, Thomas M., Erwin, Jennifer A.
Publicado 2020

Developmental excitation-inhibition imbalance underlying psychoses revealed by single-cell analyses of discordant twins-derived cerebral organoids

por Sawada, Tomoyo, Chater, Thomas E., Sasagawa, Yohei, Yoshimura, Mika, Fujimori-Tonou, Noriko, Tanaka, Kaori, Benjamin, Kynon J. M., Paquola, Apuã C. M., Erwin, Jennifer A., Goda, Yukiko, Nikaido, Itoshi, Kato, Tadafumi
Publicado 2020

A quantitative view of the transcriptome of Schistosoma mansoni adult-worms using SAGE

por Ojopi, Elida PB, Oliveira, Paulo SL, Nunes, Diana N, Paquola, Apuã, DeMarco, Ricardo, Gregório, Sheila P, Aires, Karina A, Menck, Carlos FM, Leite, Luciana CC, Verjovski-Almeida, Sergio, Dias-Neto, Emmanuel
Publicado 2007

Pathological priming causes developmental gene network heterochronicity in autism patient-derived neurons

por Schafer, Simon T., Paquola, Apua C.M., Stern, Shani, Gosselin, David, Ku, Manching, Pena, Monique, Kuret, Thomas J.M., Liyanage, Marvin, Mansour, Abed AlFatah, Jaeger, Baptiste N., Marchetto, Maria C., Glass, Christopher K., Mertens, Jerome, Gage, Fred H.
Publicado 2019

Differential LINE-1 regulation in pluripotent stem cells of humans and other great apes

por Marchetto, Maria C. N., Narvaiza, Iñigo, Denli, Ahmet M., Benner, Christopher, Lazzarini, Thomas A., Nathanson, Jason L., Paquola, Apuã C. M., Desai, Keval N., Herai, Roberto H., Weitzman, Matthew D., Yeo, Gene W., Muotri, Alysson R., Gage, Fred H.
Publicado 2013

Genetic and environmental contributions to ancestry differences in gene expression in the human brain

por Benjamin, Kynon J.M., Chen, Qiang, Eagles, Nicholas J., Huuki-Myers, Louise A., Collado-Torres, Leonardo, Stolz, Joshua M., Pertea, Geo, Shin, Joo Heon, Paquola, Apuã C.M., Hyde, Thomas M., Kleinman, Joel E., Jaffe, Andrew E., Han, Shizhong, Weinberger, Daniel R.
Publicado 2023

Nuclear RNA-seq of single neurons reveals molecular signatures of activation

por Lacar, Benjamin, Linker, Sara B., Jaeger, Baptiste N., Krishnaswami, Suguna, Barron, Jerika, Kelder, Martijn, Parylak, Sarah, Paquola, Apuã, Venepally, Pratap, Novotny, Mark, O'Connor, Carolyn, Fitzpatrick, Conor, Erwin, Jennifer, Hsu, Jonathan Y., Husband, David, McConnell, Michael J., Lasken, Roger, Gage, Fred H.
Publicado 2016

Variation in TAF1 Expression in Female Carrier-Induced Pluripotent Stem Cells and Human Brain Ontogeny Has Implications for Adult Neostriatum Vulnerability in X-Linked Dystonia Par...

por D’Ignazio, Laura, Jacomini, Ricardo S., Qamar, Bareera, Benjamin, Kynon J. M., Arora, Ria, Sawada, Tomoyo, Evans, Taylor A., Diffenderfer, Kenneth E., Pankonin, Aimee R., Hendriks, William T., Hyde, Thomas M., Kleinman, Joel E., Weinberger, Daniel R., Bragg, D. Cristopher, Paquola, Apua C. M., Erwin, Jennifer A.
Publicado 2022

Corrigendum: Nuclear RNA-seq of single neurons reveals molecular signatures of activation

por Lacar, Benjamin, Linker, Sara B., Jaeger, Baptiste N., Krishnaswami, Suguna Rani, Barron, Jerika J., Kelder, Martijn J. E., Parylak, Sarah L., Paquola, Apuã C. M., Venepally, Pratap, Novotny, Mark, O'Connor, Carolyn, Fitzpatrick, Conor, Erwin, Jennifer A., Hsu, Jonathan Y., Husband, David, McConnell, Michael J., Lasken, Roger, Gage, Fred H.
Publicado 2016

Corrigendum: Nuclear RNA-seq of single neurons reveals molecular signatures of activation

por Lacar, Benjamin, Linker, Sara B., Jaeger, Baptiste N., Krishnaswami, Suguna Rani, Barron, Jerika J., Kelder, Martijn J. E., Parylak, Sarah L, Paquola, Apuã C. M., Venepally, Pratap, Novotny, Mark, O'Connor, Carolyn, Fitzpatrick, Conor, Erwin, Jennifer A., Hsu, Jonathan Y., Husband, David, McConnell, Michael J., Lasken, Roger, Gage, Fred H.
Publicado 2017

Age-dependent instability of mature neuronal fate in induced neurons from Alzheimer’s patients

por Mertens, Jerome, Herdy, Joseph R., Traxler, Larissa, Schafer, Simon T., Schlachetzki, Johannes C.M., Böhnke, Lena, Reid, Dylan A., Lee, Hyungjun, Zangwill, Dina, Fernandes, Diana P., Agarwal, Ravi K., Lucciola, Raffaella, Zhou-Yang, Lucia, Karbacher, Lukas, Edenhofer, Frank, Stern, Shani, Horvath, Steve, Paquola, Apua C.M., Glass, Christopher K., Yuan, Shauna H., Ku, Manching, Szücs, Attila, Goldstein, Lawrence S.B., Galasko, Douglas, Gage, Fred H.
Publicado 2021