Classifying short genomic fragments from novel lineages using composition and homology

por Parks, Donovan H, MacDonald, Norman J, Beiko, Robert G
Publicado 2011

Rapid identification of high-confidence taxonomic assignments for metagenomic data

por MacDonald, Norman J., Parks, Donovan H., Beiko, Robert G.
Publicado 2012

Comparative Genomics of Candidate Phylum TM6 Suggests That Parasitism Is Widespread and Ancestral in This Lineage

por Yeoh, Yun Kit, Sekiguchi, Yuji, Parks, Donovan H., Hugenholtz, Philip
Publicado 2016

GTDB-Tk: a toolkit to classify genomes with the Genome Taxonomy Database

por Chaumeil, Pierre-Alain, Mussig, Aaron J, Hugenholtz, Philip, Parks, Donovan H
Publicado 2020

GTDB-Tk v2: memory friendly classification with the genome taxonomy database

por Chaumeil, Pierre-Alain, Mussig, Aaron J, Hugenholtz, Philip, Parks, Donovan H
Publicado 2022

CheckM: assessing the quality of microbial genomes recovered from isolates, single cells, and metagenomes

por Parks, Donovan H., Imelfort, Michael, Skennerton, Connor T., Hugenholtz, Philip, Tyson, Gene W.
Publicado 2015

Prokaryotic taxonomy and nomenclature in the age of big sequence data

por Hugenholtz, Philip, Chuvochina, Maria, Oren, Aharon, Parks, Donovan H., Soo, Rochelle M.
Publicado 2021

A catalogue of 136 microbial draft genomes from Red Sea metagenomes

por Haroon, Mohamed F., Thompson, Luke R., Parks, Donovan H., Hugenholtz, Philip, Stingl, Ulrich
Publicado 2016

First genomic insights into members of a candidate bacterial phylum responsible for wastewater bulking

por Sekiguchi, Yuji, Ohashi, Akiko, Parks, Donovan H., Yamauchi, Toshihiro, Tyson, Gene W., Hugenholtz, Philip
Publicado 2015

Back from the dead; the curious tale of the predatory cyanobacterium Vampirovibrio chlorellavorus

por Soo, Rochelle M., Woodcroft, Ben J., Parks, Donovan H., Tyson, Gene W., Hugenholtz, Philip
Publicado 2015

A Phylogenomic Analysis of the Bacterial Phylum Fibrobacteres

por Abdul Rahman, Nurdyana, Parks, Donovan H., Vanwonterghem, Inka, Morrison, Mark, Tyson, Gene W., Hugenholtz, Philip
Publicado 2016

Genome-Centric Analysis of Microbial Populations Enriched by Hydraulic Fracture Fluid Additives in a Coal Bed Methane Production Well

por Robbins, Steven J., Evans, Paul N., Parks, Donovan H., Golding, Suzanne D., Tyson, Gene W.
Publicado 2016

AnnoTree: visualization and exploration of a functionally annotated microbial tree of life

por Mendler, Kerrin, Chen, Han, Parks, Donovan H, Lobb, Briallen, Hug, Laura A, Doxey, Andrew C
Publicado 2019

GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy

por Parks, Donovan H, Chuvochina, Maria, Rinke, Christian, Mussig, Aaron J, Chaumeil, Pierre-Alain, Hugenholtz, Philip
Publicado 2021

Proposal of names for 329 higher rank taxa defined in the Genome Taxonomy Database under two prokaryotic codes

por Chuvochina, Maria, Mussig, Aaron J, Chaumeil, Pierre-Alain, Skarshewski, Adam, Rinke, Christian, Parks, Donovan H, Hugenholtz, Philip
Publicado 2023

Lateral Gene Transfer Drives Metabolic Flexibility in the Anaerobic Methane-Oxidizing Archaeal Family Methanoperedenaceae

por Leu, Andy O., McIlroy, Simon J., Ye, Jun, Parks, Donovan H., Orphan, Victoria J., Tyson, Gene W.
Publicado 2020

Evaluation of the Microba Community Profiler for Taxonomic Profiling of Metagenomic Datasets From the Human Gut Microbiome

por Parks, Donovan H., Rigato, Fabio, Vera-Wolf, Patricia, Krause, Lutz, Hugenholtz, Philip, Tyson, Gene W., Wood, David L. A.
Publicado 2021

GenGIS 2: Geospatial Analysis of Traditional and Genetic Biodiversity, with New Gradient Algorithms and an Extensible Plugin Framework

por Parks, Donovan H., Mankowski, Timothy, Zangooei, Somayyeh, Porter, Michael S., Armanini, David G., Baird, Donald J., Langille, Morgan G. I., Beiko, Robert G.
Publicado 2013

A molecular survey of Australian and North American termite genera indicates that vertical inheritance is the primary force shaping termite gut microbiomes

por Abdul Rahman, Nurdyana, Parks, Donovan H, Willner, Dana L, Engelbrektson, Anna L, Goffredi, Shana K, Warnecke, Falk, Scheffrahn, Rudolf H, Hugenholtz, Philip
Publicado 2015

An Expanded Genomic Representation of the Phylum Cyanobacteria

por Soo, Rochelle M., Skennerton, Connor T., Sekiguchi, Yuji, Imelfort, Michael, Paech, Samuel J., Dennis, Paul G., Steen, Jason A., Parks, Donovan H., Tyson, Gene W., Hugenholtz, Philip
Publicado 2014