The food-gut axis: lactic acid bacteria and their link to food, the gut microbiome and human health

por De Filippis, Francesca, Pasolli, Edoardo, Ercolini, Danilo
Publicado 2020

Machine Learning Meta-analysis of Large Metagenomic Datasets: Tools and Biological Insights

por Pasolli, Edoardo, Truong, Duy Tin, Malik, Faizan, Waldron, Levi, Segata, Nicola
Publicado 2016

Microbial strain-level population structure and genetic diversity from metagenomes

por Truong, Duy Tin, Tett, Adrian, Pasolli, Edoardo, Huttenhower, Curtis, Segata, Nicola
Publicado 2017

Host phenotype classification from human microbiome data is mainly driven by the presence of microbial taxa

por Giliberti, Renato, Cavaliere, Sara, Mauriello, Italia Elisa, Ercolini, Danilo, Pasolli, Edoardo
Publicado 2022

Profiling microbial strains in urban environments using metagenomic sequencing data

por Zolfo, Moreno, Asnicar, Francesco, Manghi, Paolo, Pasolli, Edoardo, Tett, Adrian, Segata, Nicola
Publicado 2018

Large-scale comparative metagenomics of Blastocystis, a common member of the human gut microbiome

por Beghini, Francesco, Pasolli, Edoardo, Truong, Tin Duy, Putignani, Lorenza, Cacciò, Simone M, Segata, Nicola
Publicado 2017

Large-Scale Phylogenomics of the Lactobacillus casei Group Highlights Taxonomic Inconsistencies and Reveals Novel Clade-Associated Features

por Wuyts, Sander, Wittouck, Stijn, De Boeck, Ilke, Allonsius, Camille N., Pasolli, Edoardo, Segata, Nicola, Lebeer, Sarah
Publicado 2017

Genomic and metagenomic insights into the microbial community of a thermal spring

por Pedron, Renato, Esposito, Alfonso, Bianconi, Irene, Pasolli, Edoardo, Tett, Adrian, Asnicar, Francesco, Cristofolini, Mario, Segata, Nicola, Jousson, Olivier
Publicado 2019

Draft Genome Sequence of the Planktic Cyanobacterium Tychonema bourrellyi, Isolated from Alpine Lentic Freshwater

por Pinto, Federica, Tett, Adrian, Armanini, Federica, Asnicar, Francesco, Boscaini, Adriano, Pasolli, Edoardo, Zolfo, Moreno, Donati, Claudio, Salmaso, Nico, Segata, Nicola
Publicado 2017

Draft Genome Sequences of Novel Pseudomonas, Flavobacterium, and Sediminibacterium Species Strains from a Freshwater Ecosystem

por Pinto, Federica, Tett, Adrian, Armanini, Federica, Asnicar, Francesco, Boscaini, Adriano, Pasolli, Edoardo, Zolfo, Moreno, Donati, Claudio, Salmaso, Nico, Segata, Nicola
Publicado 2018

Correction for Pinto et al., “Draft Genome Sequences of Novel Pseudomonas, Flavobacterium, and Sediminibacterium Strains from a Freshwater Ecosystem”

por Pinto, Federica, Tett, Adrian, Armanini, Federica, Asnicar, Francesco, Boscaini, Adriano, Pasolli, Edoardo, Zolfo, Moreno, Donati, Claudio, Salmaso, Nico, Segata, Nicola
Publicado 2018

Specific gut microbiome signatures and the associated pro-inflamatory functions are linked to pediatric allergy and acquisition of immune tolerance

por De Filippis, Francesca, Paparo, Lorella, Nocerino, Rita, Della Gatta, Giusy, Carucci, Laura, Russo, Roberto, Pasolli, Edoardo, Ercolini, Danilo, Berni Canani, Roberto
Publicado 2021

Large-scale genome-wide analysis links lactic acid bacteria from food with the gut microbiome

por Pasolli, Edoardo, De Filippis, Francesca, Mauriello, Italia E., Cumbo, Fabio, Walsh, Aaron M., Leech, John, Cotter, Paul D., Segata, Nicola, Ercolini, Danilo
Publicado 2020

Microbial genomes from non-human primate gut metagenomes expand the primate-associated bacterial tree of life with over 1000 novel species

por Manara, Serena, Asnicar, Francesco, Beghini, Francesco, Bazzani, Davide, Cumbo, Fabio, Zolfo, Moreno, Nigro, Eleonora, Karcher, Nicolai, Manghi, Paolo, Metzger, Marisa Isabell, Pasolli, Edoardo, Segata, Nicola
Publicado 2019

Strong oral plaque microbiome signatures for dental implant diseases identified by strain-resolution metagenomics

por Ghensi, Paolo, Manghi, Paolo, Zolfo, Moreno, Armanini, Federica, Pasolli, Edoardo, Bolzan, Mattia, Bertelle, Alberto, Dell’Acqua, Federico, Dellasega, Ester, Waldner, Romina, Tessarolo, Francesco, Tomasi, Cristiano, Segata, Nicola
Publicado 2020

Stool microRNA profiles reflect different dietary and gut microbiome patterns in healthy individuals

por Tarallo, Sonia, Ferrero, Giulio, De Filippis, Francesca, Francavilla, Antonio, Pasolli, Edoardo, Panero, Valentina, Cordero, Francesca, Segata, Nicola, Grioni, Sara, Pensa, Ruggero Gaetano, Pardini, Barbara, Ercolini, Danilo, Naccarati, Alessio
Publicado 2022

Plastics shape the black soldier fly larvae gut microbiome and select for biodegrading functions

por De Filippis, Francesca, Bonelli, Marco, Bruno, Daniele, Sequino, Giuseppina, Montali, Aurora, Reguzzoni, Marcella, Pasolli, Edoardo, Savy, Davide, Cangemi, Silvana, Cozzolino, Vincenza, Tettamanti, Gianluca, Ercolini, Danilo, Casartelli, Morena, Caccia, Silvia
Publicado 2023

Unexplored diversity and strain-level structure of the skin microbiome associated with psoriasis

por Tett, Adrian, Pasolli, Edoardo, Farina, Stefania, Truong, Duy Tin, Asnicar, Francesco, Zolfo, Moreno, Beghini, Francesco, Armanini, Federica, Jousson, Olivier, De Sanctis, Veronica, Bertorelli, Roberto, Girolomoni, Giampiero, Cristofolini, Mario, Segata, Nicola
Publicado 2017

Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital

por Manara, Serena, Pasolli, Edoardo, Dolce, Daniela, Ravenni, Novella, Campana, Silvia, Armanini, Federica, Asnicar, Francesco, Mengoni, Alessio, Galli, Luisa, Montagnani, Carlotta, Venturini, Elisabetta, Rota-Stabelli, Omar, Grandi, Guido, Taccetti, Giovanni, Segata, Nicola
Publicado 2018

A Metabologenomic approach reveals alterations in the gut microbiota of a mouse model of Alzheimer’s disease

por Favero, Francesco, Barberis, Elettra, Gagliardi, Mara, Espinoza, Stefano, Contu, Liliana, Gustincich, Stefano, Boccafoschi, Francesca, Borsotti, Chiara, Lim, Dmitry, Rubino, Vito, Mignone, Flavio, Pasolli, Edoardo, Manfredi, Marcello, Zucchelli, Silvia, Corà, Davide, Corazzari, Marco
Publicado 2022