ClaMS: A Classifier for Metagenomic Sequences

por Pati, Amrita, Heath, Lenwood S., Kyrpides, Nikos C., Ivanova, Natalia
Publicado 2011

XcisClique: analysis of regulatory bicliques

por Pati, Amrita, Vasquez-Robinet, Cecilia, Heath, Lenwood S, Grene, Ruth, Murali, TM
Publicado 2006

Large-scale contamination of microbial isolate genomes by Illumina PhiX control

por Mukherjee, Supratim, Huntemann, Marcel, Ivanova, Natalia, Kyrpides, Nikos C, Pati, Amrita
Publicado 2015

CMGSDB: integrating heterogeneous Caenorhabditis elegans data sources using compositional data mining

por Pati, Amrita, Jin, Ying, Klage, Karsten, Helm, Richard F., Heath, Lenwood S., Ramakrishnan, Naren
Publicado 2008

Integration of phenotypic metadata and protein similarity in Archaea using a spectral bipartitioning approach

por Hooper, Sean D., Anderson, Iain J., Pati, Amrita, Dalevi, Daniel, Mavromatis, Konstantinos, Kyrpides, Nikos C.
Publicado 2009

Estimating DNA coverage and abundance in metagenomes using a gamma approximation

por Hooper, Sean D., Dalevi, Daniel, Pati, Amrita, Mavromatis, Konstantinos, Ivanova, Natalia N., Kyrpides, Nikos C.
Publicado 2010

Microbial species delineation using whole genome sequences

por Varghese, Neha J., Mukherjee, Supratim, Ivanova, Natalia, Konstantinidis, Konstantinos T., Mavrommatis, Kostas, Kyrpides, Nikos C., Pati, Amrita
Publicado 2015

Partial genome sequence of the haloalkaliphilic soda lake bacterium Thioalkalivibrio thiocyanoxidans ARh 2(T)

por Berben, Tom, Sorokin, Dimitry Y., Ivanova, Natalia, Pati, Amrita, Kyrpides, Nikos, Goodwin, Lynne A., Woyke, Tanja, Muyzer, Gerard
Publicado 2015

Partial genome sequence of Thioalkalivibrio thiocyanodenitrificans ARhD 1(T), a chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium capable of complete denitrificatio...

por Berben, Tom, Sorokin, Dimitry Y., Ivanova, Natalia, Pati, Amrita, Kyrpides, Nikos, Goodwin, Lynne A., Woyke, Tanja, Muyzer, Gerard
Publicado 2015

Complete genome sequence of Thioalkalivibrio paradoxus type strain ARh 1(T), an obligately chemolithoautotrophic haloalkaliphilic sulfur-oxidizing bacterium isolated from a Kenyan...

por Berben, Tom, Sorokin, Dimitry Y., Ivanova, Natalia, Pati, Amrita, Kyrpides, Nikos, Goodwin, Lynne A., Woyke, Tanja, Muyzer, Gerard
Publicado 2015

Complete genome sequence of “Thioalkalivibrio sulfidophilus” HL-EbGr7

por Muyzer, Gerard, Sorokin, Dimitry Yu, Mavromatis, Konstantinos, Lapidus, Alla, Clum, Alicia, Ivanova, Natalia, Pati, Amrita, d'Haeseleer, Patrick, Woyke, Tanja, Kyrpides, Nikos C.
Publicado 2011

Toward a standard in structural genome annotation for prokaryotes

por Tripp, H. James, Sutton, Granger, White, Owen, Wortman, Jennifer, Pati, Amrita, Mikhailova, Natalia, Ovchinnikova, Galina, Payne, Samuel H., Kyrpides, Nikos C., Ivanova, Natalia
Publicado 2015

ProDeGe: a computational protocol for fully automated decontamination of genomes

por Tennessen, Kristin, Andersen, Evan, Clingenpeel, Scott, Rinke, Christian, Lundberg, Derek S, Han, James, Dangl, Jeff L, Ivanova, Natalia, Woyke, Tanja, Kyrpides, Nikos, Pati, Amrita
Publicado 2016

High-quality permanent draft genome sequence of Bradyrhizobium sp. Ai1a-2; a microsymbiont of Andira inermis discovered in Costa Rica

por Tian, Rui, Parker, Matthew, Seshadri, Rekha, Reddy, TBK, Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Baeshen, Mohammed, Baeshen, Nabih, Kyrpides, Nikos, Reeve, Wayne
Publicado 2015

High-quality permanent draft genome sequence of Ensifer meliloti strain 4H41, an effective salt- and drought-tolerant microsymbiont of Phaseolus vulgaris

por Mhamdi, Ridha, Ardley, Julie, Tian, Rui, Seshadri, Rekha, Reddy, T.B.K., Pati, Amrita, Woyke, Tanja, Markowitz, Victor, Ivanova, Natalia, Kyrpides, Nikos, Reeve, Wayne
Publicado 2015

High-quality permanent draft genome sequence of the Lebeckia - nodulating Burkholderia dilworthii strain WSM3556(T)

por De Meyer, Sofie E., Tian, Rui, Seshadri, Rekha, Ivanova, Natalia, Pati, Amrita, Markowitz, Victor, Woyke, Tanja, Yates, Ron, Howieson, John, Kyrpides, Nikos, Reeve, Wayne
Publicado 2015

Complete genome sequence of Thioalkalivibrio sp. K90mix

por Muyzer, Gerard, Sorokin, Dimitry Y., Mavromatis, Konstantinos, Lapidus, Alla, Foster, Brian, Sun, Hui, Ivanova, Natalia, Pati, Amrita, D'haeseleer, Patrik, Woyke, Tanja, Kyrpides, Nikos C.
Publicado 2011

High quality draft genome sequence of Olivibacter sitiensis type strain (AW-6(T)), a diphenol degrader with genes involved in the catechol pathway

por Ntougias, Spyridon, Lapidus, Alla, Han, James, Mavromatis, Konstantinos, Pati, Amrita, Chen, Amy, Klenk, Hans-Peter, Woyke, Tanja, Fasseas, Constantinos, Kyrpides, Nikos C., Zervakis, Georgios I.
Publicado 2014

High-quality permanent draft genome sequence of Bradyrhizobium sp. Tv2a.2, a microsymbiont of Tachigali versicolor discovered in Barro Colorado Island of Panama

por Tian, Rui, Parker, Matthew, Seshadri, Rekha, Reddy, TBK, Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Baeshen, Mohammed N, Baeshen, Nabih A, Kyrpides, Nikos, Reeve, Wayne
Publicado 2015

High-quality permanent draft genome sequence of Bradyrhizobium sp. Th.b2, a microsymbiont of Amphicarpaea bracteata collected in Johnson City, New York

por Tian, Rui, Parker, Matthew, Seshadri, Rekha, Reddy, TBK, Markowitz, Victor, Ivanova, Natalia, Pati, Amrita, Woyke, Tanja, Baeshen, Mohammed N, Baeshen, Nabih A, Kyrpides, Nikos, Reeve, Wayne
Publicado 2015