miRge3.0: a comprehensive microRNA and tRF sequencing analysis pipeline

por Patil, Arun H, Halushka, Marc K
Publicado 2021

Genome-wide Profiling of RNA splicing in prostate tumor from RNA-seq data using virtual microarrays

por Srinivasan, Subhashini, Patil, Arun H, Verma, Mohit, Bingham, Jonathan L, Srivatsan, Raghunathan
Publicado 2012

A curated human cellular microRNAome based on 196 primary cell types

por Patil, Arun H, Baran, Andrea, Brehm, Zachary P, McCall, Matthew N, Halushka, Marc K
Publicado 2022

Proteome data of Anopheles stephensi ovary using high-resolution mass spectrometry

por Dey, Gourav, Mohanty, Ajeet Kumar, Kumar, Manish, Sreenivasamurthy, Sreelakshmi K., Patil, Arun H., Keshava Prasad, T.S., Kumar, Ashwani
Publicado 2018

Integrated Multi-Omic Analysis of Mycobacterium tuberculosis H37Ra Redefines Virulence Attributes

por Pinto, Sneha M., Verma, Renu, Advani, Jayshree, Chatterjee, Oishi, Patil, Arun H., Kapoor, Saketh, Subbannayya, Yashwanth, Raja, Remya, Gandotra, Sheetal, Prasad, T. S. Keshava
Publicado 2018

CusVarDB: A tool for building customized sample-specific variant protein database from next-generation sequencing datasets

por Kasaragod, Sandeep, Mohanty, Varshasnata, Tyagi, Ankur, Behera, Santosh Kumar, Patil, Arun H., Pinto, Sneha M., Prasad, T. S. Keshava, Modi, Prashant Kumar, Gowda, Harsha
Publicado 2020

Dissecting Plasmodium yoelii Pathobiology: Proteomic Approaches for Decoding Novel Translational and Post-Translational Modifications

por Rex, Devasahayam Arokia Balaya, Patil, Arun H., Modi, Prashant Kumar, Kandiyil, Mrudula Kinarulla, Kasaragod, Sandeep, Pinto, Sneha M., Tanneru, Nandita, Sijwali, Puran Singh, Prasad, Thottethodi Subrahmanya Keshava
Publicado 2022

Phosphotyrosine profiling of curcumin-induced signaling

por Sathe, Gajanan, Pinto, Sneha M., Syed, Nazia, Nanjappa, Vishalakshi, Solanki, Hitendra S., Renuse, Santosh, Chavan, Sandip, Khan, Aafaque Ahmad, Patil, Arun H., Nirujogi, Raja Sekhar, Nair, Bipin, Mathur, Premendu Prakash, Prasad, T. S. Keshava, Gowda, Harsha, Chatterjee, Aditi
Publicado 2016

Cigarette smoke and chewing tobacco alter expression of different sets of miRNAs in oral keratinocytes

por Bhat, Mohd Younis, Advani, Jayshree, Rajagopalan, Pavithra, Patel, Krishna, Nanjappa, Vishalakshi, Solanki, Hitendra S., Patil, Arun H., Bhat, Firdous A., Mathur, Premendu P., Nair, Bipin, Prasad, T. S. Keshava, Califano, Joseph A., Sidransky, David, Gowda, Harsha, Chatterjee, Aditi
Publicado 2018

Proteomic analysis of human vitreous humor

por Murthy, Krishna R, Goel, Renu, Subbannayya, Yashwanth, Jacob, Harrys KC, Murthy, Praveen R, Manda, Srikanth Srinivas, Patil, Arun H, Sharma, Rakesh, Sahasrabuddhe, Nandini A, Parashar, Arun, Nair, Bipin G, Krishna, Venkatarangaiah, Prasad, TS Keshava, Gowda, Harsha, Pandey, Akhilesh
Publicado 2014

Single cell RNA-seq analysis of the flexor digitorum brevis mouse myofibers

por Verma, Rohan X., Kannan, Suraj, Lin, Brian L., Fomchenko, Katherine M., Nieuwenhuis, Tim O., Patil, Arun H., Lukban, Clarisse, Yang, Xiaoping, Fox-Talbot, Karen, McCall, Matthew N., Kwon, Chulan, Kass, David A., Rosenberg, Avi Z., Halushka, Marc K.
Publicado 2021

Chronic exposure to cigarette smoke leads to activation of p21 (RAC1)-activated kinase 6 (PAK6) in non-small cell lung cancer cells

por Raja, Remya, Sahasrabuddhe, Nandini A., Radhakrishnan, Aneesha, Syed, Nazia, Solanki, Hitendra S., Puttamallesh, Vinuth N., Balaji, Sai A., Nanjappa, Vishalakshi, Datta, Keshava K., Babu, Niraj, Renuse, Santosh, Patil, Arun H., Izumchenko, Evgeny, Prasad, T.S. Keshava, Chang, Xiaofei, Rangarajan, Annapoorni, Sidransky, David, Pandey, Akhilesh, Gowda, Harsha, Chatterjee, Aditi
Publicado 2016

Toward the human cellular microRNAome

por McCall, Matthew N., Kim, Min-Sik, Adil, Mohammed, Patil, Arun H., Lu, Yin, Mitchell, Christopher J., Leal-Rojas, Pamela, Xu, Jinchong, Kumar, Manoj, Dawson, Valina L., Dawson, Ted M., Baras, Alexander S., Rosenberg, Avi Z., Arking, Dan E., Burns, Kathleen H., Pandey, Akhilesh, Halushka, Marc K.
Publicado 2017

MAP2K1 is a potential therapeutic target in erlotinib resistant head and neck squamous cell carcinoma

por Jain, Ankit P., Patel, Krishna, Pinto, Sneha, Radhakrishnan, Aneesha, Nanjappa, Vishalakshi, Kumar, Manish, Raja, Remya, Patil, Arun H., Kumari, Anjali, Manoharan, Malini, Karunakaran, Coral, Murugan, Saktivel, Keshava Prasad, T. S., Chang, Xiaofei, Mathur, Premendu Prakash, Kumar, Prashant, Gupta, Ravi, Gupta, Rohit, Khanna-Gupta, Arati, Sidransky, David, Chatterjee, Aditi, Gowda, Harsha
Publicado 2019

Macrophage migration inhibitory factor - a therapeutic target in gallbladder cancer

por Subbannayya, Tejaswini, Leal-Rojas, Pamela, Barbhuiya, Mustafa A., Raja, Remya, Renuse, Santosh, Sathe, Gajanan, Pinto, Sneha M., Syed, Nazia, Nanjappa, Vishalakshi, Patil, Arun H., Garcia, Patricia, Sahasrabuddhe, Nandini A., Nair, Bipin, Guerrero-Preston, Rafael, Navani, Sanjay, Tiwari, Pramod K., Santosh, Vani, Sidransky, David, Prasad, T. S. Keshava, Gowda, Harsha, Roa, Juan Carlos, Pandey, Akhilesh, Chatterjee, Aditi
Publicado 2015

Targeting focal adhesion kinase overcomes erlotinib resistance in smoke induced lung cancer by altering phosphorylation of epidermal growth factor receptor

por Solanki, Hitendra S., Raja, Remya, Zhavoronkov, Alex, Ozerov, Ivan V., Artemov, Artem V., Advani, Jayshree, Radhakrishnan, Aneesha, Babu, Niraj, Puttamallesh, Vinuth N., Syed, Nazia, Nanjappa, Vishalakshi, Subbannayya, Tejaswini, Sahasrabuddhe, Nandini A., Patil, Arun H., Prasad, T.S. Keshava, Gaykalova, Daria, Chang, Xiaofei, Sathyendran, Rachana, Mathur, Premendu Prakash, Rangarajan, Annapoorni, Sidransky, David, Pandey, Akhilesh, Izumchenko, Evgeny, Gowda, Harsha, Chatterjee, Aditi
Publicado 2018

Correction: Targeting focal adhesion kinase overcomes erlotinib resistance in smoke induced lung cancer by altering phosphorylation of epidermal growth factor receptor

por Solanki, Hitendra S., Raja, Remya, Zhavoronkov, Alex, Ozerov, Ivan V., Artemov, Artem V., Advani, Jayshree, Radhakrishnan, Aneesha, Babu, Niraj, Puttamallesh, Vinuth N., Syed, Nazia, Nanjappa, Vishalakshi, Subbannayya, Tejaswini, Sahasrabuddhe, Nandini A., Patil, Arun H., Prasad, T.S. Keshava, Gaykalova, Daria, Chang, Xiaofei, Sathyendran, Rachana, Mathur, Premendu Prakash, Rangarajan, Annapoorni, Sidransky, David, Pandey, Akhilesh, Izumchenko, Evgeny, Gowda, Harsha, Chatterjee, Aditi
Publicado 2021

Integrating transcriptomic and proteomic data for accurate assembly and annotation of genomes

por Prasad, T.S. Keshava, Mohanty, Ajeet Kumar, Kumar, Manish, Sreenivasamurthy, Sreelakshmi K., Dey, Gourav, Nirujogi, Raja Sekhar, Pinto, Sneha M., Madugundu, Anil K., Patil, Arun H., Advani, Jayshree, Manda, Srikanth S., Gupta, Manoj Kumar, Dwivedi, Sutopa B., Kelkar, Dhanashree S., Hall, Brantley, Jiang, Xiaofang, Peery, Ashley, Rajagopalan, Pavithra, Yelamanchi, Soujanya D., Solanki, Hitendra S., Raja, Remya, Sathe, Gajanan J., Chavan, Sandip, Verma, Renu, Patel, Krishna M., Jain, Ankit P., Syed, Nazia, Datta, Keshava K., Khan, Aafaque Ahmed, Dammalli, Manjunath, Jayaram, Savita, Radhakrishnan, Aneesha, Mitchell, Christopher J., Na, Chan-Hyun, Kumar, Nirbhay, Sinnis, Photini, Sharakhov, Igor V., Wang, Charles, Gowda, Harsha, Tu, Zhijian, Kumar, Ashwani, Pandey, Akhilesh
Publicado 2017

A draft map of the human proteome

por Kim, Min-Sik, Pinto, Sneha M., Getnet, Derese, Nirujogi, Raja Sekhar, Manda, Srikanth S., Chaerkady, Raghothama, Madugundu, Anil K., Kelkar, Dhanashree S., Isserlin, Ruth, Jain, Shobhit, Thomas, Joji K., Muthusamy, Babylakshmi, Leal-Rojas, Pamela, Kumar, Praveen, Sahasrabuddhe, Nandini A., Balakrishnan, Lavanya, Advani, Jayshree, George, Bijesh, Renuse, Santosh, Selvan, Lakshmi Dhevi N., Patil, Arun H., Nanjappa, Vishalakshi, Radhakrishnan, Aneesha, Prasad, Samarjeet, Subbannayya, Tejaswini, Raju, Rajesh, Kumar, Manish, Sreenivasamurthy, Sreelakshmi K., Marimuthu, Arivusudar, Sathe, Gajanan J., Chavan, Sandip, Datta, Keshava K., Subbannayya, Yashwanth, Sahu, Apeksha, Yelamanchi, Soujanya D., Jayaram, Savita, Rajagopalan, Pavithra, Sharma, Jyoti, Murthy, Krishna R., Syed, Nazia, Goel, Renu, Khan, Aafaque A., Ahmad, Sartaj, Dey, Gourav, Mudgal, Keshav, Chatterjee, Aditi, Huang, Tai-Chung, Zhong, Jun, Wu, Xinyan, Shaw, Patrick G., Freed, Donald, Zahari, Muhammad S., Mukherjee, Kanchan K., Shankar, Subramanian, Mahadevan, Anita, Lam, Henry, Mitchell, Christopher J., Shankar, Susarla Krishna, Satishchandra, Parthasarathy, Schroeder, John T., Sirdeshmukh, Ravi, Maitra, Anirban, Leach, Steven D., Drake, Charles G., Halushka, Marc K., Prasad, T. S. Keshava, Hruban, Ralph H., Kerr, Candace L., Bader, Gary D., Iacobuzio-Donahue, Christine A., Gowda, Harsha, Pandey, Akhilesh
Publicado 2014