Contribution of Network Connectivity in Determining the Relationship between Gene Expression and Metabolite Concentration Changes

por Zelezniak, Aleksej, Sheridan, Steven, Patil, Kiran Raosaheb
Publicado 2014

Architecture of transcriptional regulatory circuits is knitted over the topology of bio-molecular interaction networks

por Oliveira, Ana Paula, Patil, Kiran Raosaheb, Nielsen, Jens
Publicado 2008

Integration of Biomass Formulations of Genome-Scale Metabolic Models with Experimental Data Reveals Universally Essential Cofactors in Prokaryotes

por Xavier, Joana C., Patil, Kiran Raosaheb, Rocha, Isabel
Publicado 2017

Metabolic models and gene essentiality data reveal essential and conserved metabolism in prokaryotes

por Xavier, Joana C., Patil, Kiran Raosaheb, Rocha, Isabel
Publicado 2018

Evolutionary programming as a platform for in silico metabolic engineering

por Patil, Kiran Raosaheb, Rocha, Isabel, Förster, Jochen, Nielsen, Jens
Publicado 2005

Fast automated reconstruction of genome-scale metabolic models for microbial species and communities

por Machado, Daniel, Andrejev, Sergej, Tramontano, Melanie, Patil, Kiran Raosaheb
Publicado 2018

Towards a mechanistic understanding of reciprocal drug–microbiome interactions

por Zimmermann, Michael, Patil, Kiran Raosaheb, Typas, Athanasios, Maier, Lisa
Publicado 2021

A new metabolic model of Drosophila melanogaster and the integrative analysis of Parkinson’s disease

por Cesur, Müberra Fatma, Basile, Arianna, Patil, Kiran Raosaheb, Çakır, Tunahan
Publicado 2023

Metabolic anchor reactions for robust biorefining

por Jouhten, Paula, Huerta-Cepas, Jaime, Bork, Peer, Patil, Kiran Raosaheb
Publicado 2017

Random sampling of elementary flux modes in large-scale metabolic networks

por Machado, Daniel, Soons, Zita, Patil, Kiran Raosaheb, Ferreira, Eugénio C., Rocha, Isabel
Publicado 2012

Metabolic Network Topology Reveals Transcriptional Regulatory Signatures of Type 2 Diabetes

por Zelezniak, Aleksej, Pers, Tune H., Soares, Simão, Patti, Mary Elizabeth, Patil, Kiran Raosaheb
Publicado 2010

Yeast metabolic chassis designs for diverse biotechnological products

por Jouhten, Paula, Boruta, Tomasz, Andrejev, Sergej, Pereira, Filipa, Rocha, Isabel, Patil, Kiran Raosaheb
Publicado 2016

Proteomic characterization of extracellular vesicles produced by several wine yeast species

por Mencher, Ana, Morales, Pilar, Valero, Eva, Tronchoni, Jordi, Patil, Kiran Raosaheb, Gonzalez, Ramon
Publicado 2020

Reconstruction and analysis of genome-scale metabolic model of a photosynthetic bacterium

por Montagud, Arnau, Navarro, Emilio, Fernández de Córdoba, Pedro, Urchueguía, Javier F, Patil, Kiran Raosaheb
Publicado 2010

Integration of metabolome data with metabolic networks reveals reporter reactions

por Çakir, Tunahan, Patil, Kiran Raosaheb, Önsan, Zeynep Ilsen, Ülgen, Kutlu Özergin, Kirdar, Betül, Nielsen, Jens
Publicado 2006

Improved vanillin production in baker's yeast through in silico design

por Brochado, Ana Rita, Matos, Claudia, Møller, Birger L, Hansen, Jørgen, Mortensen, Uffe H, Patil, Kiran Raosaheb
Publicado 2010

Bioactivity assessment of natural compounds using machine learning models trained on target similarity between drugs

por Periwal, Vinita, Bassler, Stefan, Andrejev, Sergej, Gabrielli, Natalia, Patil, Kaustubh Raosaheb, Typas, Athanasios, Patil, Kiran Raosaheb
Publicado 2022

Unravelling metabolic cross‐feeding in a yeast–bacteria community using (13)C‐based proteomics

por Gabrielli, Natalia, Maga‐Nteve, Christoniki, Kafkia, Eleni, Rettel, Mandy, Loeffler, Jakob, Kamrad, Stephan, Typas, Athanasios, Patil, Kiran Raosaheb
Publicado 2023

BioMet Toolbox: genome-wide analysis of metabolism

por Cvijovic, Marija, Olivares-Hernández, Roberto, Agren, Rasmus, Dahr, Niklas, Vongsangnak, Wanwipa, Nookaew, Intawat, Patil, Kiran Raosaheb, Nielsen, Jens
Publicado 2010

Natural computation meta-heuristics for the in silico optimization of microbial strains

por Rocha, Miguel, Maia, Paulo, Mendes, Rui, Pinto, José P, Ferreira, Eugénio C, Nielsen, Jens, Patil, Kiran Raosaheb, Rocha, Isabel
Publicado 2008