SJARACNe: a scalable software tool for gene network reverse engineering from big data

por Khatamian, Alireza, Paull, Evan O, Califano, Andrea, Yu, Jiyang
Publicado 2019

Pathway-Based Genomics Prediction using Generalized Elastic Net

por Sokolov, Artem, Carlin, Daniel E., Paull, Evan O., Baertsch, Robert, Stuart, Joshua M.
Publicado 2016

Prophetic Granger Causality to infer gene regulatory networks

por Carlin, Daniel E., Paull, Evan O., Graim, Kiley, Wong, Christopher K., Bivol, Adrian, Ryabinin, Peter, Ellrott, Kyle, Sokolov, Artem, Stuart, Joshua M.
Publicado 2017

The number of titrated microRNA species dictates ceRNA regulation

por Chiu, Hua-Sheng, Martínez, María Rodríguez, . Komissarova, Elena V, Llobet-Navas, David, Bansal, Mukesh, Paull, Evan O, Silva, José, Yang, Xuerui, Sumazin, Pavel, Califano, Andrea
Publicado 2018

Revealing cancer subtypes with higher-order correlations applied to imaging and omics data

por Graim, Kiley, Liu, Tiffany Ting, Achrol, Achal S., Paull, Evan O., Newton, Yulia, Chang, Steven D., Harsh, Griffith R., Cordero, Sergio P., Rubin, Daniel L., Stuart, Joshua M.
Publicado 2017

Common and cell-type specific responses to anti-cancer drugs revealed by high throughput transcript profiling

por Niepel, Mario, Hafner, Marc, Duan, Qiaonan, Wang, Zichen, Paull, Evan O., Chung, Mirra, Lu, Xiaodong, Stuart, Joshua M., Golub, Todd R., Subramanian, Aravind, Ma’ayan, Avi, Sorger, Peter K.
Publicado 2017

Inferring causal molecular networks: empirical assessment through a community-based effort

por Hill, Steven M, Heiser, Laura M, Cokelaer, Thomas, Unger, Michael, Nesser, Nicole K, Carlin, Daniel E, Zhang, Yang, Sokolov, Artem, Paull, Evan O, Wong, Chris K, Graim, Kiley, Bivol, Adrian, Wang, Haizhou, Zhu, Fan, Afsari, Bahman, Danilova, Ludmila V, Favorov, Alexander V, Lee, Wai Shing, Taylor, Dane, Hu, Chenyue W, Long, Byron L, Noren, David P, Bisberg, Alexander J, Mills, Gordon B, Gray, Joe W, Kellen, Michael, Norman, Thea, Friend, Stephen, Qutub, Amina A, Fertig, Elana J, Guan, Yuanfang, Song, Mingzhou, Stuart, Joshua M, Spellman, Paul T, Koeppl, Heinz, Stolovitzky, Gustavo, Saez-Rodriguez, Julio, Mukherjee, Sach
Publicado 2016