Profiling the baseline performance and limits of machine learning models for adaptive immune receptor repertoire classification

por Kanduri, Chakravarthi, Pavlović, Milena, Scheffer, Lonneke, Motwani, Keshav, Chernigovskaya, Maria, Greiff, Victor, Sandve, Geir K
Publicado 2022

immuneSIM: tunable multi-feature simulation of B- and T-cell receptor repertoires for immunoinformatics benchmarking

por Weber, Cédric R, Akbar, Rahmad, Yermanos, Alexander, Pavlović, Milena, Snapkov, Igor, Sandve, Geir K, Reddy, Sai T, Greiff, Victor
Publicado 2020

simAIRR: simulation of adaptive immune repertoires with realistic receptor sequence sharing for benchmarking of immune state prediction methods

por Kanduri, Chakravarthi, Scheffer, Lonneke, Pavlović, Milena, Rand, Knut Dagestad, Chernigovskaya, Maria, Pirvandy, Oz, Yaari, Gur, Greiff, Victor, Sandve, Geir K
Publicado 2023

Artificial intelligence-driven prediction of COVID-19-related hospitalization and death: a systematic review

por Shakibfar, Saeed, Nyberg, Fredrik, Li, Huiqi, Zhao, Jing, Nordeng, Hedvig Marie Egeland, Sandve, Geir Kjetil Ferkingstad, Pavlovic, Milena, Hajiebrahimi, Mohammadhossein, Andersen, Morten, Sessa, Maurizio
Publicado 2023

Individualized VDJ recombination predisposes the available Ig sequence space

por Slabodkin, Andrei, Chernigovskaya, Maria, Mikocziova, Ivana, Akbar, Rahmad, Scheffer, Lonneke, Pavlović, Milena, Bashour, Habib, Snapkov, Igor, Mehta, Brij Bhushan, Weber, Cédric R., Gutierrez-Marcos, Jose, Sollid, Ludvig M., Haff, Ingrid Hobæk, Sandve, Geir Kjetil, Robert, Philippe A., Greiff, Victor
Publicado 2021

In silico proof of principle of machine learning-based antibody design at unconstrained scale

por Akbar, Rahmad, Robert, Philippe A., Weber, Cédric R., Widrich, Michael, Frank, Robert, Pavlović, Milena, Scheffer, Lonneke, Chernigovskaya, Maria, Snapkov, Igor, Slabodkin, Andrei, Mehta, Brij Bhushan, Miho, Enkelejda, Lund-Johansen, Fridtjof, Andersen, Jan Terje, Hochreiter, Sepp, Hobæk Haff, Ingrid, Klambauer, Günter, Sandve, Geir Kjetil, Greiff, Victor
Publicado 2022