Validation and interpretation of IGH and TCR clonality testing by Ion Torrent S5 NGS for diagnosis and disease monitoring in B and T cell cancers

por Lay, Lindsay, Stroup, Brooke, Payton, Jacqueline E.
Publicado 2020

PLAIDOH: a novel method for functional prediction of long non-coding RNAs identifies cancer-specific LncRNA activities

por Pyfrom, Sarah C., Luo, Hong, Payton, Jacqueline E.
Publicado 2019

Genotify: Fast, lightweight gene lookup and summarization

por Andrews, Jared M., El-Alawi, Mohamed, Payton, Jacqueline E.
Publicado 2018

An integrated approach to characterize transcription factor and microRNA regulatory networks involved in Schwann cell response to peripheral nerve injury

por Chang, Li-Wei, Viader, Andreu, Varghese, Nobish, Payton, Jacqueline E, Milbrandt, Jeffrey, Nagarajan, Rakesh
Publicado 2013

Computational identification of the normal and perturbed genetic networks involved in myeloid differentiation and acute promyelocytic leukemia

por Chang, Li Wei, Payton, Jacqueline E, Yuan, Wenlin, Ley, Timothy J, Nagarajan, Rakesh, Stormo, Gary D
Publicado 2008

POU4F1 is associated with t(8;21) acute myeloid leukemia and contributes directly to its unique transcriptional signature

por Fortier, Julie M., Payton, Jacqueline E., Cahan, Patrick, Ley, Timothy J., Walter, Matthew J., Graubert, Timothy A.
Publicado 2010

Novel cell adhesion/migration pathways are predictive markers of HDAC inhibitor resistance in cutaneous T cell lymphoma

por Andrews, Jared M., Schmidt, Jennifer A., Carson, Kenneth R., Musiek, Amy C., Mehta-Shah, Neha, Payton, Jacqueline E.
Publicado 2019

Determining subpopulation methylation profiles from bisulfite sequencing data of heterogeneous samples using DXM

por Fong, Jerry, Gardner, Jacob R, Andrews, Jared M, Cashen, Amanda F, Payton, Jacqueline E, Weinberger, Kilian Q, Edwards, John R
Publicado 2021

Identification of transcriptional regulatory networks specific to pilocytic astrocytoma

por Deshmukh, Hrishikesh, Yu, Jinsheng, Shaik, Jahangheer, MacDonald, Tobey J, Perry, Arie, Payton, Jacqueline E, Gutmann, David H, Watson, Mark A, Nagarajan, Rakesh
Publicado 2011

RAG-Mediated DNA Breaks Attenuate PU.1 Activity in Early B Cells through Activation of a SPIC-BCLAF1 Complex

por Soodgupta, Deepti, White, Lynn S., Yang, Wei, Johnston, Rachel, Andrews, Jared M., Kohyama, Masako, Murphy, Kenneth M., Mosammaparast, Nima, Payton, Jacqueline E., Bednarski, Jeffrey J.
Publicado 2019

Quantitative Label-Free Proteomics for Discovery of Biomarkers in Cerebrospinal Fluid: Assessment of Technical and Inter-Individual Variation

por Perrin, Richard J., Payton, Jacqueline E., Malone, James P., Gilmore, Petra, Davis, Alan E., Xiong, Chengjie, Fagan, Anne M., Townsend, R. Reid, Holtzman, David M.
Publicado 2013

Mapping of Variable DNA Methylation Across Multiple Cell Types Defines a Dynamic Regulatory Landscape of the Human Genome

por Gu, Junchen, Stevens, Michael, Xing, Xiaoyun, Li, Daofeng, Zhang, Bo, Payton, Jacqueline E., Oltz, Eugene M., Jarvis, James N., Jiang, Kaiyu, Cicero, Theodore, Costello, Joseph F., Wang, Ting
Publicado 2016

A type I IFN-dependent DNA damage response regulates the genetic program and inflammasome activation in macrophages

por Morales, Abigail J, Carrero, Javier A, Hung, Putzer J, Tubbs, Anthony T, Andrews, Jared M, Edelson, Brian T, Calderon, Boris, Innes, Cynthia L, Paules, Richard S, Payton, Jacqueline E, Sleckman, Barry P
Publicado 2017

RAG-mediated DNA double-strand breaks activate a cell type–specific checkpoint to inhibit pre–B cell receptor signals

por Bednarski, Jeffrey J., Pandey, Ruchi, Schulte, Emily, White, Lynn S., Chen, Bo-Ruei, Sandoval, Gabriel J., Kohyama, Masako, Haldar, Malay, Nickless, Andrew, Trott, Amanda, Cheng, Genhong, Murphy, Kenneth M., Bassing, Craig H., Payton, Jacqueline E., Sleckman, Barry P.
Publicado 2016

Epigenomic regulation of human T-cell leukemia virus by chromatin-insulator CTCF

por Cheng, Xiaogang, Joseph, Ancy, Castro, Victor, Chen-Liaw, Alice, Skidmore, Zachary, Ueno, Takaharu, Fujisawa, Jun-ichi, Rauch, Daniel A., Challen, Grant A., Martinez, Michael P., Green, Patrick, Griffith, Malachi, Payton, Jacqueline E., Edwards, John R., Ratner, Lee
Publicado 2021

Focal disruption of DNA methylation dynamics at enhancers in IDH-mutant AML cells

por Wilson, Elisabeth R., Helton, Nichole M., Heath, Sharon E., Fulton, Robert S., Payton, Jacqueline E., Welch, John S., Walter, Matthew J., Westervelt, Peter, DiPersio, John F., Link, Daniel C., Miller, Christopher A., Ley, Timothy J., Spencer, David H.
Publicado 2021

Loss of synergistic transcriptional feedback loops drives diverse B-cell cancers

por Andrews, Jared M., Pyfrom, Sarah C., Schmidt, Jennifer A., Koues, Olivia I., Kowalewski, Rodney A., Grams, Nicholas R., Sun, Jessica J., Berman, Leigh R., Duncavage, Eric J., Lee, Yi-Shan, Cashen, Amanda F., Oltz, Eugene M., Payton, Jacqueline E.
Publicado 2021

Nuclear-localized human respiratory syncytial virus NS1 protein modulates host gene transcription

por Pei, Jingjing, Beri, Nina R., Zou, Angela J., Hubel, Philipp, Dorando, Hannah K., Bergant, Valter, Andrews, Rebecca D., Pan, Jiehong, Andrews, Jared M., Sheehan, Kathleen C.F., Pichlmair, Andreas, Amarasinghe, Gaya K., Brody, Steven L., Payton, Jacqueline E., Leung, Daisy W.
Publicado 2021

Genetic and Transcriptional Contributions to Relapse in Normal Karyotype Acute Myeloid Leukemia

por Petti, Allegra A., Khan, Saad M., Xu, Ziheng, Helton, Nichole, Fronick, Catrina C., Fulton, Robert, Ramakrishnan, Sai M., Nonavinkere Srivatsan, Sridhar, Heath, Sharon E., Westervelt, Peter, Payton, Jacqueline E., Walter, Matthew J., Link, Daniel C., DiPersio, John, Miller, Christopher, Ley, Timothy J.
Publicado 2022

Proteomic and phosphoproteomic landscapes of acute myeloid leukemia

por Kramer, Michael H., Zhang, Qiang, Sprung, Robert, Day, Ryan B., Erdmann-Gilmore, Petra, Li, Yang, Xu, Ziheng, Helton, Nichole M., George, Daniel R., Mi, Yiling, Westervelt, Peter, Payton, Jacqueline E., Ramakrishnan, Sai M., Miller, Christopher A., Link, Daniel C., DiPersio, John F., Walter, Matthew J., Townsend, R. Reid, Ley, Timothy J.
Publicado 2022