X-MATE: a flexible system for mapping short read data

por Wood, David L. A., Xu, Qinying, Pearson, John V., Cloonan, Nicole, Grimmond, Sean M.
Publicado 2011

Deep learning in cancer diagnosis, prognosis and treatment selection

por Tran, Khoa A., Kondrashova, Olga, Bradley, Andrew, Williams, Elizabeth D., Pearson, John V., Waddell, Nicola
Publicado 2021

Ask the people: developing guidelines for genomic research with Aboriginal and Torres Strait Islander peoples

por Kaladharan, Sid, Vidgen, Miranda E, Pearson, John V, Donoghue, Victoria K, Whiteman, David C, Waddell, Nicola, Pratt, Gregory
Publicado 2021

SNiPer: Improved SNP genotype calling for Affymetrix 10K GeneChip microarray data

por Huentelman, Matthew J, Craig, David W, Shieh, Albert D, Corneveaux, Jason J, Hu-Lince, Diane, Pearson, John V, Stephan, Dietrich A
Publicado 2005

PINA v2.0: mining interactome modules

por Cowley, Mark J., Pinese, Mark, Kassahn, Karin S., Waddell, Nic, Pearson, John V., Grimmond, Sean M., Biankin, Andrew V., Hautaniemi, Sampsa, Wu, Jianmin
Publicado 2012

Resolving Individuals Contributing Trace Amounts of DNA to Highly Complex Mixtures Using High-Density SNP Genotyping Microarrays

por Homer, Nils, Szelinger, Szabolcs, Redman, Margot, Duggan, David, Tembe, Waibhav, Muehling, Jill, Pearson, John V., Stephan, Dietrich A., Nelson, Stanley F., Craig, David W.
Publicado 2008

Efficient detection and monitoring of pediatric brain malignancies with liquid biopsy based on patient-specific somatic mutation screening

por Kojic, Marija, Maybury, Mellissa K, Waddell, Nicola, Koufariotis, Lambros T, Addala, Venkateswar, Millar, Amanda, Wood, Scott, Pearson, John V, Hansford, Jordan R, Hassall, Tim, Wainwright, Brandon J
Publicado 2023

Whole exome sequencing of an asbestos-induced wild-type murine model of malignant mesothelioma

por Sneddon, Sophie, Patch, Ann-Marie, Dick, Ian M., Kazakoff, Stephen, Pearson, John V., Waddell, Nicola, Allcock, Richard J. N., Holt, Robert A., Robinson, Bruce W. S., Creaney, Jenette
Publicado 2017

Verifying explainability of a deep learning tissue classifier trained on RNA-seq data

por Yap, Melvyn, Johnston, Rebecca L., Foley, Helena, MacDonald, Samual, Kondrashova, Olga, Tran, Khoa A., Nones, Katia, Koufariotis, Lambros T., Bean, Cameron, Pearson, John V., Trzaskowski, Maciej, Waddell, Nicola
Publicado 2021

Tumor Signature Analysis Implicates Hereditary Cancer Genes in Endometrial Cancer Development

por Kondrashova, Olga, Shamsani, Jannah, O’Mara, Tracy A., Newell, Felicity, Reed, Amy E. McCart, Lakhani, Sunil R., Kirk, Judy, Pearson, John V., Waddell, Nicola, Spurdle, Amanda B.
Publicado 2021

IDENTIFICATION OF GENETIC VARIANTS USING BARCODED MULTIPLEXED SEQUENCING

por Craig, David W., Pearson, John V., Szelinger, Szabolcs, Sekar, Aswin, Margot, Redma, Corneveaux, Jason J., Pawlowski, Traci L., Laub, Trisha, Nunn, Gary, Stephan, Dietrich A., Homer, Nils, Huentelman, Matthew J.
Publicado 2008

Generalising uncertainty improves accuracy and safety of deep learning analytics applied to oncology

por MacDonald, Samual, Foley, Helena, Yap, Melvyn, Johnston, Rebecca L., Steven, Kaiah, Koufariotis, Lambros T., Sharma, Sowmya, Wood, Scott, Addala, Venkateswar, Pearson, John V., Roosta, Fred, Waddell, Nicola, Kondrashova, Olga, Trzaskowski, Maciej
Publicado 2023

Intratumoural Heterogeneity Underlies Distinct Therapy Responses and Treatment Resistance in Glioblastoma

por Akgül, Seçkin, Patch, Ann-Marie, D’Souza, Rochelle C.J., Mukhopadhyay, Pamela, Nones, Katia, Kempe, Sarah, Kazakoff, Stephen H., Jeffree, Rosalind L., Stringer, Brett W., Pearson, John V., Waddell, Nicola, Day, Bryan W.
Publicado 2019

Performance of tumour microenvironment deconvolution methods in breast cancer using single-cell simulated bulk mixtures

por Tran, Khoa A., Addala, Venkateswar, Johnston, Rebecca L., Lovell, David, Bradley, Andrew, Koufariotis, Lambros T., Wood, Scott, Wu, Sunny Z., Roden, Daniel, Al-Eryani, Ghamdan, Swarbrick, Alexander, Williams, Elizabeth D., Pearson, John V., Kondrashova, Olga, Waddell, Nicola
Publicado 2023

Using whole-genome sequencing data to derive the homologous recombination deficiency scores

por de Luca, Xavier M., Newell, Felicity, Kazakoff, Stephen H., Hartel, Gunter, McCart Reed, Amy E., Holmes, Oliver, Xu, Qinying, Wood, Scott, Leonard, Conrad, Pearson, John V., Lakhani, Sunil R., Waddell, Nicola, Nones, Katia, Simpson, Peter T.
Publicado 2020

Pathogenic germline variants are associated with poor survival in stage III/IV melanoma patients

por Aoude, Lauren G., Bonazzi, Vanessa F., Brosda, Sandra, Patel, Kalpana, Koufariotis, Lambros T., Oey, Harald, Nones, Katia, Wood, Scott, Pearson, John V., Lonie, James M., Arneil, Melissa, Atkinson, Victoria, Smithers, B. Mark, Waddell, Nicola, Barbour, Andrew P.
Publicado 2020

APC Mutation Marks an Aggressive Subtype of BRAF Mutant Colorectal Cancers

por Fennell, Lochlan J., Kane, Alexandra, Liu, Cheng, McKeone, Diane, Fernando, Winnie, Su, Chang, Bond, Catherine, Jamieson, Saara, Dumenil, Troy, Patch, Ann-Marie, Kazakoff, Stephen H., Pearson, John V., Waddell, Nicola, Leggett, Barbara, Whitehall, Vicki L. J.
Publicado 2020

Next-Generation Sequencing of Coccidioides immitis Isolated during Cluster Investigation

por Engelthaler, David M., Chiller, Tom, Schupp, James A., Colvin, Joshua, Beckstrom-Sternberg, Stephen M., Driebe, Elizabeth M., Moses, Tracy, Tembe, Waibhav, Sinari, Shripad, Beckstrom-Sternberg, James S., Christoforides, Alexis, Pearson, John V., Carpten, John, Keim, Paul, Peterson, Ashley, Terashita, Dawn, Balajee, S. Arunmozhi
Publicado 2011

Returning individual research results for genome sequences of pancreatic cancer

por Johns, Amber L, Miller, David K, Simpson, Skye H, Gill, Anthony J, Kassahn, Karin S, Humphris, Jeremy L, Samra, Jaswinder S, Tucker, Katherine, Andrews, Lesley, Chang, David K, Waddell, Nicola, Pajic, Marina, Pearson, John V, Grimmond, Sean M, Biankin, Andrew V, Zeps, Nikolajs
Publicado 2014

Whole Genome Sequencing in Advanced Lung Cancer can be Performed Using Diff-Quik Cytology Smears Derived from Endobronchial Ultrasound, Transbronchial Needle Aspiration (EBUS TBNA)

por Fielding, David, Dalley, Andrew J., Singh, Mahendra, Nandakumar, Lakshmy, Lakis, Vanessa, Chittoory, Haarika, Fairbairn, David, Ferguson, Kaltin, Bashirzadeh, Farzad, Bint, Michael, Pahoff, Carl, Son, Jung Hwa, Hodgson, Alan, Pearson, John V., Waddell, Nicola, Lakhani, Sunil R., Hartel, Gunter, Nones, Katia, Simpson, Peter T.
Publicado 2023