Open source tool for prediction of genome wide protein-protein interaction network based on ortholog information

por Pedamallu, Chandra Sekhar, Posfai, Janos
Publicado 2010

Faster Protein Splicing with the Nostoc punctiforme DnaE Intein Using Non-native Extein Residues

por Cheriyan, Manoj, Pedamallu, Chandra Sekhar, Tori, Kazuo, Perler, Francine
Publicado 2013

Cloning of NruI and Sbo13I restriction and modification sstems in E. coli and amino acid sequence comparison of M.NruI and M.Sbo13I with other amino-methyltransferases

por Zhu, Zhenyu, Pedamallu, Chandra Sekhar, Fomenkov, Alexey, Benner, Jack, Xu, Shuang-yong
Publicado 2010

Kmt2a cooperates with menin to suppress tumorigenesis in mouse pancreatic islets

por Lin, Wenchu, Francis, Joshua M., Li, Hong, Gao, Xiaoping, Pedamallu, Chandra Sekhar, Ernst, Patricia, Meyerson, Matthew
Publicado 2016

GATK PathSeq: a customizable computational tool for the discovery and identification of microbial sequences in libraries from eukaryotic hosts

por Walker, Mark A, Pedamallu, Chandra Sekhar, Ojesina, Akinyemi I, Bullman, Susan, Sharpe, Ted, Whelan, Christopher W, Meyerson, Matthew
Publicado 2018

Targeting the oncogene LSF with either the small molecule inhibitor FQI1 or siRNA causes mitotic delays with unaligned chromosomes, resulting in cell death or senescence

por Willoughby, Jennifer L. S., George, Kelly, Roberto, Mark P., Chin, Hang Gyeong, Stoiber, Patrick, Shin, Hyunjin, Pedamallu, Chandra Sekhar, Schaus, Scott E., Fitzgerald, Kevin, Shah, Jagesh, Hansen, Ulla
Publicado 2020

A novel totivirus and piscine reovirus (PRV) in Atlantic salmon (Salmo salar) with cardiomyopathy syndrome (CMS)

por Løvoll, Marie, Wiik-Nielsen, Jannicke, Grove, Søren, Wiik-Nielsen, Christer R, Kristoffersen, Anja B, Faller, Randi, Poppe, Trygve, Jung, Joonil, Pedamallu, Chandra S, Nederbragt, Alexander J, Meyerson, Matthew, Rimstad, Espen, Tengs, Torstein
Publicado 2010

A Pan-Cancer Analysis of Transcriptome Changes Associated with Somatic Mutations in U2AF1 Reveals Commonly Altered Splicing Events

por Brooks, Angela N., Choi, Peter S., de Waal, Luc, Sharifnia, Tanaz, Imielinski, Marcin, Saksena, Gordon, Pedamallu, Chandra Sekhar, Sivachenko, Andrey, Rosenberg, Mara, Chmielecki, Juliann, Lawrence, Michael S., DeLuca, David S., Getz, Gad, Meyerson, Matthew
Publicado 2014

Genomic alterations associated with mutational signatures, DNA damage repair and chromatin remodeling pathways in cervical carcinoma

por Halle, Mari K., Sundaresan, Aishwarya, Zhang, Jianqing, Pedamallu, Chandra Sekhar, Srinivasasainagendra, Vinodh, Blair, Jessica, Brooke, Dewey, Bertelsen, Bjørn I., Woie, Kathrine, Shrestha, Sadeep, Tiwari, Hemant, Wong, Yick Fu, Krakstad, Camilla, Ojesina, Akinyemi I.
Publicado 2021

DNA copy number analysis of metastatic urothelial carcinoma with comparison to primary tumors

por Bambury, Richard M, Bhatt, Ami S, Riester, Markus, Pedamallu, Chandra Sekhar, Duke, Fujiko, Bellmunt, Joaquim, Stack, Edward C, Werner, Lillian, Park, Rachel, Iyer, Gopa, Loda, Massimo, Kantoff, Philip W, Michor, Franziska, Meyerson, Matthew, Rosenberg, Jonathan E
Publicado 2015

Genomic Characterization and Therapeutic Targeting of HPV Undetected Cervical Carcinomas

por Ruiz, Fiona J., Sundaresan, Aishwarya, Zhang, Jin, Pedamallu, Chandra S., Halle, Mari K., Srinivasasainagendra, Vinodh, Zhang, Jianqing, Muhammad, Naoshad, Stanley, Jennifer, Markovina, Stephanie, Tiwari, Hemant K., Grigsby, Perry W., Krakstad, Camilla, Schwarz, Julie K., Ojesina, Akinyemi I.
Publicado 2021

Complete hematologic response of early T-cell progenitor acute lymphoblastic leukemia to the γ-secretase inhibitor BMS-906024: genetic and epigenetic findings in an outlier case

por Knoechel, Birgit, Bhatt, Ami, Pan, Li, Pedamallu, Chandra S., Severson, Eric, Gutierrez, Alejandro, Dorfman, David M., Kuo, Frank C., Kluk, Michael, Kung, Andrew L., Zweidler-McKay, Patrick, Meyerson, Matthew, Blacklow, Stephen C., DeAngelo, Daniel J., Aster, Jon C.
Publicado 2015

Metagenomic Characterization of Microbial Communities In Situ Within the Deeper Layers of the Ileum in Crohn’s Disease

por Pedamallu, Chandra Sekhar, Bhatt, Ami S., Bullman, Susan, Fowler, Sharyle, Freeman, Samuel S., Durand, Jacqueline, Jung, Joonil, Duke, Fujiko, Manzo, Veronica, Cai, Diana, Ananthakrishnan, Ashwin, Ojesina, Akinyemi I., Ramachandran, Aruna, Gevers, Dirk, Xavier, Ramnik J., Bhan, Atul K., Meyerson, Matthew, Yajnik, Vijay
Publicado 2016

Genome-scale analysis identifies paralog lethality as a vulnerability of chromosome 1p loss in cancer

por Viswanathan, Srinivas R., Nogueira, Marina F., Buss, Colin G., Krill-Burger, John M., Wawer, Mathias J., Malolepsza, Edyta, Berger, Ashton C., Choi, Peter S., Shih, Juliann, Taylor, Alison M., Tanenbaum, Benjamin, Pedamallu, Chandra Sekhar, Cherniack, Andrew D., Tamayo, Pablo, Strathdee, Craig A., Lage, Kasper, Carr, Steven A., Schenone, Monica, Bhatia, Sangeeta N., Vazquez, Francisca, Tsherniak, Aviad, Hahn, William C., Meyerson, Matthew
Publicado 2018

Distinct patterns of somatic genome alterations in lung adenocarcinomas and squamous cell carcinomas

por Campbell, Joshua D., Alexandrov, Anton, Kim, Jaegil, Wala, Jeremiah, Berger, Alice H., Pedamallu, Chandra Sekhar, Shukla, Sachet A., Guo, Guangwu, Brooks, Angela N., Murray, Bradley A., Imielinski, Marcin, Hu, Xin, Ling, Shiyun, Akbani, Rehan, Rosenberg, Mara, Cibulskis, Carrie, Ramachandran, Aruna, Collisson, Eric A., Kwiatkowski, David J., Lawrence, Michael S., Weinstein, John N., Verhaak, Roel G. W., Wu, Catherine J., Hammerman, Peter S., Cherniack, Andrew D., Getz, Gad, Artyomov, Maxim N., Schreiber, Robert, Govindan, Ramaswamy, Meyerson, Matthew
Publicado 2016

The Complete Genome of Teredinibacter turnerae T7901: An Intracellular Endosymbiont of Marine Wood-Boring Bivalves (Shipworms)

por Yang, Joyce C., Madupu, Ramana, Durkin, A. Scott, Ekborg, Nathan A., Pedamallu, Chandra S., Hostetler, Jessica B., Radune, Diana, Toms, Bradley S., Henrissat, Bernard, Coutinho, Pedro M., Schwarz, Sandra, Field, Lauren, Trindade-Silva, Amaro E., Soares, Carlos A. G., Elshahawi, Sherif, Hanora, Amro, Schmidt, Eric W., Haygood, Margo G., Posfai, Janos, Benner, Jack, Madinger, Catherine, Nove, John, Anton, Brian, Chaudhary, Kshitiz, Foster, Jeremy, Holman, Alex, Kumar, Sanjay, Lessard, Philip A., Luyten, Yvette A., Slatko, Barton, Wood, Nicole, Wu, Bo, Teplitski, Max, Mougous, Joseph D., Ward, Naomi, Eisen, Jonathan A., Badger, Jonathan H., Distel, Daniel L.
Publicado 2009

Dissection of PIK3CA Aberration for Cervical Adenocarcinoma Outcomes

por Chung, Tony K. H., Doran, Graeme, Cheung, Tak-Hong, Yim, So-Fan, Yu, Mei-Yung, Worley, Michael J., Elias, Kevin M., Thorner, Aaron R., Pedamallu, Chandra Sekhar, Ojesina, Akinyemi I., Lau, Kei-Man, Ducar, Matthew D., Wong, Raymond R. Y., Wang, Vivian W., Nag, Anwesha, Wollison, Bruce M., Dalgarno, Audrey, Lee, Jacqueline H. S., Yeung, Suet-Ying, Wong, Lo, Horowitz, Neil S., Davis, Michelle R., Leung, Shuk-On A., Mu, Yi, Mok, Samuel C., Chan, Paul K. S., Lawrence, Michael S., Crum, Christopher P., Chiu, Rossa W. K., Berkowitz, Ross S., Wong, Yick-Fu
Publicado 2021

Integrative Genomic Analysis of Cholangiocarcinoma Identifies Distinct IDH-Mutant Molecular Profiles

por Farshidfar, Farshad, Zheng, Siyuan, Gingras, Marie-Claude, Newton, Yulia, Shih, Juliann, Robertson, A. Gordon, Hinoue, Toshinori, Hoadley, Katherine A., Gibb, Ewan A., Roszik, Jason, Covington, Kyle R., Wu, Chia-Chin, Shinbrot, Eve, Stransky, Nicolas, Hegde, Apurva, Yang, Ju Dong, Reznik, Ed, Sadeghi, Sara, Pedamallu, Chandra Sekhar, Ojesina, Akinyemi I., Hess, Julian M., Auman, J. Todd, Rhie, Suhn K., Bowlby, Reanne, Borad, Mitesh J., Zhu, Andrew X., Stuart, Josh M., Sander, Chris, Akbani, Rehan, Cherniack, Andrew D., Deshpande, Vikram, Mounajjed, Taofic, Foo, Wai Chin, Torbenson, Michael S., Kleiner, David E., Laird, Peter W., Wheeler, David A., McRee, Autumn J., Bathe, Oliver F., Andersen, Jesper B., Bardeesy, Nabeel, Roberts, Lewis R., Kwong, Lawrence N.
Publicado 2017

Genomic basis for RNA alterations in cancer

por Calabrese, Claudia, Davidson, Natalie R., Demircioğlu, Deniz, Fonseca, Nuno A., He, Yao, Kahles, André, Lehmann, Kjong-Van, Liu, Fenglin, Shiraishi, Yuichi, Soulette, Cameron M., Urban, Lara, Greger, Liliana, Li, Siliang, Liu, Dongbing, Perry, Marc D., Xiang, Qian, Zhang, Fan, Zhang, Junjun, Bailey, Peter, Erkek, Serap, Hoadley, Katherine A., Hou, Yong, Huska, Matthew R., Kilpinen, Helena, Korbel, Jan O., Marin, Maximillian G., Markowski, Julia, Nandi, Tannistha, Pan-Hammarström, Qiang, Pedamallu, Chandra Sekhar, Siebert, Reiner, Stark, Stefan G., Su, Hong, Tan, Patrick, Waszak, Sebastian M., Yung, Christina, Zhu, Shida, Awadalla, Philip, Creighton, Chad J., Meyerson, Matthew, Ouellette, B. F. Francis, Wu, Kui, Yang, Huanming, Brazma, Alvis, Brooks, Angela N., Göke, Jonathan, Rätsch, Gunnar, Schwarz, Roland F., Stegle, Oliver, Zhang, Zemin
Publicado 2020

Author Correction: Genomic basis for RNA alterations in cancer

por Calabrese, Claudia, Davidson, Natalie R., Demircioğlu, Deniz, Fonseca, Nuno A., He, Yao, Kahles, André, Lehmann, Kjong-Van, Liu, Fenglin, Shiraishi, Yuichi, Soulette, Cameron M., Urban, Lara, Greger, Liliana, Li, Siliang, Liu, Dongbing, Perry, Marc D., Xiang, Qian, Zhang, Fan, Zhang, Junjun, Bailey, Peter, Erkek, Serap, Hoadley, Katherine A., Hou, Yong, Huska, Matthew R., Kilpinen, Helena, Korbel, Jan O., Marin, Maximillian G., Markowski, Julia, Nandi, Tannistha, Pan-Hammarström, Qiang, Pedamallu, Chandra Sekhar, Siebert, Reiner, Stark, Stefan G., Su, Hong, Tan, Patrick, Waszak, Sebastian M., Yung, Christina, Zhu, Shida, Awadalla, Philip, Creighton, Chad J., Meyerson, Matthew, Ouellette, B. F. Francis, Wu, Kui, Yang, Huanming, Brazma, Alvis, Brooks, Angela N., Göke, Jonathan, Rätsch, Gunnar, Schwarz, Roland F., Stegle, Oliver, Zhang, Zemin
Publicado 2023