miRNA activity inferred from single cell mRNA expression

por Nielsen, Morten Muhlig, Pedersen, Jakob Skou
Publicado 2021

SNPest: a probabilistic graphical model for estimating genotypes

por Lindgreen, Stinus, Krogh, Anders, Pedersen, Jakob Skou
Publicado 2014

Significance evaluation in factor graphs

por Madsen, Tobias, Hobolth, Asger, Jensen, Jens Ledet, Pedersen, Jakob Skou
Publicado 2017

DNA Topoisomerases Are Required for Preinitiation Complex Assembly during GAL Gene Activation

por Roedgaard, Morten, Fredsoe, Jacob, Pedersen, Jakob Madsen, Bjergbaek, Lotte, Andersen, Anni Hangaard
Publicado 2015

Regmex: a statistical tool for exploring motifs in ranked sequence lists from genomics experiments

por Nielsen, Morten Muhlig, Tataru, Paula, Madsen, Tobias, Hobolth, Asger, Pedersen, Jakob Skou
Publicado 2018

The landscape and driver potential of site-specific hotspots across cancer genomes

por Juul, Randi Istrup, Nielsen, Morten Muhlig, Juul, Malene, Feuerbach, Lars, Pedersen, Jakob Skou
Publicado 2021

Sequence dependencies and mutation rates of localized mutational processes in cancer

por Poulsgaard, Gustav Alexander, Sørensen, Simon Grund, Juul, Randi Istrup, Nielsen, Morten Muhlig, Pedersen, Jakob Skou
Publicado 2023

ncdDetect2: improved models of the site-specific mutation rate in cancer and driver detection with robust significance evaluation

por Juul, Malene, Madsen, Tobias, Guo, Qianyun, Bertl, Johanna, Hobolth, Asger, Kellis, Manolis, Pedersen, Jakob Skou
Publicado 2019

Online measurement of temperature and relative humidity as marker tools for quality changes in onion bulbs during storage

por Islam, Md. Nahidul, Wang, Aimei, Pedersen, Jakob Skov, Sørensen, Jørn Nygaard, Körner, Oliver, Edelenbos, Merete
Publicado 2019

Fast, Accurate and Automatic Ancient Nucleosome and Methylation Maps with epiPALEOMIX

por Hanghøj, Kristian, Seguin-Orlando, Andaine, Schubert, Mikkel, Madsen, Tobias, Pedersen, Jakob Skou, Willerslev, Eske, Orlando, Ludovic
Publicado 2016

Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

por Carlevaro-Fita, Joana, Lanzós, Andrés, Feuerbach, Lars, Hong, Chen, Mas-Ponte, David, Pedersen, Jakob Skou, Johnson, Rory
Publicado 2020

Author Correction: Cancer LncRNA Census reveals evidence for deep functional conservation of long noncoding RNAs in tumorigenesis

por Carlevaro-Fita, Joana, Lanzós, Andrés, Feuerbach, Lars, Hong, Chen, Mas-Ponte, David, Pedersen, Jakob Skou, Johnson, Rory
Publicado 2022

Circular stable intronic RNAs possess distinct biological features and are deregulated in bladder cancer

por Rasmussen, Asta M, Okholm, Trine Line H, Knudsen, Michael, Vang, Søren, Dyrskjøt, Lars, Hansen, Thomas B, Pedersen, Jakob S
Publicado 2023

A site specific model and analysis of the neutral somatic mutation rate in whole-genome cancer data

por Bertl, Johanna, Guo, Qianyun, Juul, Malene, Besenbacher, Søren, Nielsen, Morten Muhlig, Hornshøj, Henrik, Pedersen, Jakob Skou, Hobolth, Asger
Publicado 2018

Optimized targeted sequencing of cell-free plasma DNA from bladder cancer patients

por Christensen, Emil, Nordentoft, Iver, Vang, Søren, Birkenkamp-Demtröder, Karin, Jensen, Jørgen Bjerggaard, Agerbæk, Mads, Pedersen, Jakob Skou, Dyrskjøt, Lars
Publicado 2018

Identification and Classification of Conserved RNA Secondary Structures in the Human Genome

por Pedersen, Jakob Skou, Bejerano, Gill, Siepel, Adam, Rosenbloom, Kate, Lindblad-Toh, Kerstin, Lander, Eric S, Kent, Jim, Miller, Webb, Haussler, David
Publicado 2006

epiG: statistical inference and profiling of DNA methylation from whole-genome bisulfite sequencing data

por Vincent, Martin, Mundbjerg, Kamilla, Skou Pedersen, Jakob, Liang, Gangning, Jones, Peter A., Ørntoft, Torben Falck, Dalsgaard Sørensen, Karina, Wiuf, Carsten
Publicado 2017

Non-coding cancer driver candidates identified with a sample- and position-specific model of the somatic mutation rate

por Juul, Malene, Bertl, Johanna, Guo, Qianyun, Nielsen, Morten Muhlig, Świtnicki, Michał, Hornshøj, Henrik, Madsen, Tobias, Hobolth, Asger, Pedersen, Jakob Skou
Publicado 2017

Pan-cancer association of DNA repair deficiencies with whole-genome mutational patterns

por Sørensen, Simon Grund, Shrikhande, Amruta, Poulsgaard, Gustav Alexander, Christensen, Mikkel Hovden, Bertl, Johanna, Laursen, Britt Elmedal, Hoffmann, Eva R, Pedersen, Jakob Skou
Publicado 2023

Identification of expressed and conserved human noncoding RNAs

por Nielsen, Morten Muhlig, Tehler, Disa, Vang, Søren, Sudzina, Frantisek, Hedegaard, Jakob, Nordentoft, Iver, Ørntoft, Torben Falck, Lund, Anders H., Pedersen, Jakob Skou
Publicado 2014