Protein degradation and dynamic tRNA thiolation fine-tune translation at elevated temperatures

por Tyagi, Kshitiz, Pedrioli, Patrick G.A.
Publicado 2015

Hydrophilic Strong Anion Exchange (hSAX) Chromatography for Highly Orthogonal Peptide Separation of Complex Proteomes

por Ritorto, Maria Stella, Cook, Ken, Tyagi, Kshitiz, Pedrioli, Patrick G. A., Trost, Matthias
Publicado 2013

Classification of mouse B cell types using surfaceome proteotype maps

por van Oostrum, Marc, Müller, Maik, Klein, Fabian, Bruderer, Roland, Zhang, Hui, Pedrioli, Patrick G. A., Reiter, Lukas, Tsapogas, Panagiotis, Rolink, Antonius, Wollscheid, Bernd
Publicado 2019

Surfaceome dynamics reveal proteostasis-independent reorganization of neuronal surface proteins during development and synaptic plasticity

por van Oostrum, Marc, Campbell, Benjamin, Seng, Charlotte, Müller, Maik, tom Dieck, Susanne, Hammer, Jacqueline, Pedrioli, Patrick G. A., Földy, Csaba, Tyagarajan, Shiva K., Wollscheid, Bernd
Publicado 2020

Author Correction: Surfaceome dynamics reveal proteostasis-independent reorganization of neuronal surface proteins during development and synaptic plasticity

por van Oostrum, Marc, Campbell, Benjamin, Seng, Charlotte, Müller, Maik, Dieck, Susanne tom, Hammer, Jacqueline, Pedrioli, Patrick G. A., Földy, Csaba, Tyagarajan, Shiva K., Wollscheid, Bernd
Publicado 2020

Phosphorylation of Parkin at Serine65 is essential for activation: elaboration of a Miro1 substrate-based assay of Parkin E3 ligase activity

por Kazlauskaite, Agne, Kelly, Van, Johnson, Clare, Baillie, Carla, Hastie, C. James, Peggie, Mark, Macartney, Thomas, Woodroof, Helen I., Alessi, Dario R., Pedrioli, Patrick G. A., Muqit, Miratul M. K.
Publicado 2014

A tissue-based draft map of the murine MHC class I immunopeptidome

por Schuster, Heiko, Shao, Wenguang, Weiss, Tobias, Pedrioli, Patrick G.A., Roth, Patrick, Weller, Michael, Campbell, David S., Deutsch, Eric W., Moritz, Robert L., Planz, Oliver, Rammensee, Hans-Georg, Aebersold, Ruedi, Caron, Etienne
Publicado 2018

Mitochondrial NAD(+) Controls Nuclear ARTD1-Induced ADP-Ribosylation

por Hopp, Ann-Katrin, Teloni, Federico, Bisceglie, Lavinia, Gondrand, Corentin, Raith, Fabio, Nowak, Kathrin, Muskalla, Lukas, Howald, Anna, Pedrioli, Patrick G.A., Johnsson, Kai, Altmeyer, Matthias, Pedrioli, Deena M. Leslie, Hottiger, Michael O.
Publicado 2021

Diagnostics and correction of batch effects in large‐scale proteomic studies: a tutorial

por Čuklina, Jelena, Lee, Chloe H, Williams, Evan G, Sajic, Tatjana, Collins, Ben C, Rodríguez Martínez, María, Sharma, Varun S, Wendt, Fabian, Goetze, Sandra, Keele, Gregory R, Wollscheid, Bernd, Aebersold, Ruedi, Pedrioli, Patrick G A
Publicado 2021

PCfun: a hybrid computational framework for systematic characterization of protein complex function

por Sharma, Varun S, Fossati, Andrea, Ciuffa, Rodolfo, Buljan, Marija, Williams, Evan G, Chen, Zhen, Shao, Wenguang, Pedrioli, Patrick G A, Purcell, Anthony W, Martínez, María Rodríguez, Song, Jiangning, Manica, Matteo, Aebersold, Ruedi, Li, Chen
Publicado 2022

Statistical control of peptide and protein error rates in large-scale targeted DIA analyses

por Rosenberger, George, Bludau, Isabell, Schmitt, Uwe, Heusel, Moritz, Hunter, Christie, Liu, Yansheng, MacCoss, Michael J., MacLean, Brendan X., Nesvizhskii, Alexey I., Pedrioli, Patrick G. A., Reiter, Lukas, Röst, Hannes L., Tate, Stephen, Ting, Ying S., Collins, Ben C., Aebersold, Ruedi
Publicado 2017

Proteogenetic drug response profiling elucidates targetable vulnerabilities of myelofibrosis

por Wildschut, Mattheus H. E., Mena, Julien, Dördelmann, Cyril, van Oostrum, Marc, Hale, Benjamin D., Settelmeier, Jens, Festl, Yasmin, Lysenko, Veronika, Schürch, Patrick M., Ring, Alexander, Severin, Yannik, Bader, Michael S., Pedrioli, Patrick G. A., Goetze, Sandra, van Drogen, Audrey, Balabanov, Stefan, Skoda, Radek C., Lopes, Massimo, Wollscheid, Bernd, Theocharides, Alexandre P. A., Snijder, Berend
Publicado 2023

Integrated multi-omics reveals anaplerotic rewiring in methylmalonyl-CoA mutase deficiency

por Forny, Patrick, Bonilla, Ximena, Lamparter, David, Shao, Wenguang, Plessl, Tanja, Frei, Caroline, Bingisser, Anna, Goetze, Sandra, van Drogen, Audrey, Harshman, Keith, Pedrioli, Patrick G. A., Howald, Cedric, Poms, Martin, Traversi, Florian, Bürer, Céline, Cherkaoui, Sarah, Morscher, Raphael J., Simmons, Luke, Forny, Merima, Xenarios, Ioannis, Aebersold, Ruedi, Zamboni, Nicola, Rätsch, Gunnar, Dermitzakis, Emmanouil T., Wollscheid, Bernd, Baumgartner, Matthias R., Froese, D. Sean
Publicado 2023

The SysteMHC Atlas project

por Shao, Wenguang, Pedrioli, Patrick G A, Wolski, Witold, Scurtescu, Cristian, Schmid, Emanuel, Vizcaíno, Juan A, Courcelles, Mathieu, Schuster, Heiko, Kowalewski, Daniel, Marino, Fabio, Arlehamn, Cecilia S L, Vaughan, Kerrie, Peters, Bjoern, Sette, Alessandro, Ottenhoff, Tom H M, Meijgaarden, Krista E, Nieuwenhuizen, Natalie, Kaufmann, Stefan H E, Schlapbach, Ralph, Castle, John C, Nesvizhskii, Alexey I, Nielsen, Morten, Deutsch, Eric W, Campbell, David S, Moritz, Robert L, Zubarev, Roman A, Ytterberg, Anders Jimmy, Purcell, Anthony W, Marcilla, Miguel, Paradela, Alberto, Wang, Qi, Costello, Catherine E, Ternette, Nicola, van Veelen, Peter A, van Els, Cécile A C M, Heck, Albert J R, de Souza, Gustavo A, Sollid, Ludvig M, Admon, Arie, Stevanovic, Stefan, Rammensee, Hans-Georg, Thibault, Pierre, Perreault, Claude, Bassani-Sternberg, Michal, Aebersold, Ruedi, Caron, Etienne
Publicado 2018