Ten Simple Rules for a Bioinformatics Journal Club

por Lonsdale, Andrew, Sietsma Penington, Jocelyn, Rice, Timothy, Walker, Michael, Dashnow, Harriet
Publicado 2016

Adverse effects of isoniazid preventative therapy for latent tuberculosis infection: a prospective cohort study

por Denholm, Justin T, McBryde, Emma S, Eisen, Damon P, Penington, Jocelyn S, Chen, Caroline, Street, Alan C
Publicado 2014

GRIDSS: sensitive and specific genomic rearrangement detection using positional de Bruijn graph assembly

por Cameron, Daniel L., Schröder, Jan, Penington, Jocelyn Sietsma, Do, Hongdo, Molania, Ramyar, Dobrovic, Alexander, Speed, Terence P., Papenfuss, Anthony T.
Publicado 2017

A single‐cell RNA expression atlas of normal, preneoplastic and tumorigenic states in the human breast

por Pal, Bhupinder, Chen, Yunshun, Vaillant, François, Capaldo, Bianca D, Joyce, Rachel, Song, Xiaoyu, Bryant, Vanessa L, Penington, Jocelyn S, Di Stefano, Leon, Tubau Ribera, Nina, Wilcox, Stephen, Mann, Gregory B, Papenfuss, Anthony T, Lindeman, Geoffrey J, Smyth, Gordon K, Visvader, Jane E
Publicado 2021

Influence of fecal collection conditions and 16S rRNA gene sequencing at two centers on human gut microbiota analysis

por Penington, Jocelyn Sietsma, Penno, Megan A. S., Ngui, Katrina M., Ajami, Nadim J., Roth-Schulze, Alexandra J., Wilcox, Stephen A., Bandala-Sanchez, Esther, Wentworth, John M., Barry, Simon C., Brown, Cheryl Y., Couper, Jennifer J., Petrosino, Joseph F., Papenfuss, Anthony T., Harrison, Leonard C.
Publicado 2018

A 4-cyano-3-methylisoquinoline inhibitor of Plasmodium falciparum growth targets the sodium efflux pump PfATP4

por Gilson, Paul R., Kumarasingha, Rasika, Thompson, Jennifer, Zhang, Xinxin, Penington, Jocelyn Sietsma, Kalhor, Robabeh, Bullen, Hayley E., Lehane, Adele M., Dans, Madeline G., de Koning-Ward, Tania F., Holien, Jessica K., Soares da Costa, Tatiana P., Hulett, Mark D., Buskes, Melissa J., Crabb, Brendan S., Kirk, Kiaran, Papenfuss, Anthony T., Cowman, Alan F., Abbott, Belinda M.
Publicado 2019

A Matched Molecular and Clinical Analysis of the Epithelioid Haemangioendothelioma Cohort in the Stafford Fox Rare Cancer Program and Contextual Literature Review

por Abdelmogod, Arwa, Papadopoulos, Lia, Riordan, Stephen, Wong, Melvin, Weltman, Martin, Lim, Ratana, McEvoy, Christopher, Fellowes, Andrew, Fox, Stephen, Bedő, Justin, Penington, Jocelyn, Pham, Kym, Hofmann, Oliver, Vissers, Joseph H. A., Grimmond, Sean, Ratnayake, Gayanie, Christie, Michael, Mitchell, Catherine, Murray, William K., McClymont, Kelly, Luk, Peter, Papenfuss, Anthony T., Kee, Damien, Scott, Clare L., Goldstein, David, Barker, Holly E.
Publicado 2023

Malaria parasite DNA-harbouring vesicles activate cytosolic immune sensors

por Sisquella, Xavier, Ofir-Birin, Yifat, Pimentel, Matthew A., Cheng, Lesley, Abou Karam, Paula, Sampaio, Natália G., Penington, Jocelyn Sietsma, Connolly, Dympna, Giladi, Tal, Scicluna, Benjamin J., Sharples, Robyn A., Waltmann, Andreea, Avni, Dror, Schwartz, Eli, Schofield, Louis, Porat, Ziv, Hansen, Diana S., Papenfuss, Anthony T., Eriksson, Emily M., Gerlic, Motti, Hill, Andrew F., Bowie, Andrew G., Regev-Rudzki, Neta
Publicado 2017

7-N-Substituted-3-oxadiazole Quinolones with Potent Antimalarial Activity Target the Cytochrome bc(1) Complex

por Nguyen, William, Dans, Madeline G., Currie, Iain, Awalt, Jon Kyle, Bailey, Brodie L., Lumb, Chris, Ngo, Anna, Favuzza, Paola, Palandri, Josephine, Ramesh, Saishyam, Penington, Jocelyn, Jarman, Kate E., Mukherjee, Partha, Chakraborty, Arnish, Maier, Alexander G., van Dooren, Giel G., Papenfuss, Tony, Wittlin, Sergio, Churchyard, Alisje, Baum, Jake, Winzeler, Elizabeth A., Baud, Delphine, Brand, Stephen, Jackson, Paul F., Cowman, Alan F., Sleebs, Brad E.
Publicado 2023

The microtubule inhibitor eribulin demonstrates efficacy in platinum-resistant and refractory high-grade serous ovarian cancer patient-derived xenograft models

por Ho, Gwo Yaw, Vandenberg, Cassandra J., Lim, Ratana, Christie, Elizabeth L., Garsed, Dale W., Lieschke, Elizabeth, Nesic, Ksenija, Kondrashova, Olga, Ratnayake, Gayanie, Radke, Marc, Penington, Jocelyn S., Carmagnac, Amandine, Heong, Valerie, Kyran, Elizabeth L., Zhang, Fan, Traficante, Nadia, Huang, Ruby, Dobrovic, Alexander, Swisher, Elizabeth M., McNally, Orla, Kee, Damien, Wakefield, Matthew J., Papenfuss, Anthony T., Bowtell, David D. L., Barker, Holly E., Scott, Clare L.
Publicado 2023

Safety, infectivity and immunogenicity of a genetically attenuated blood-stage malaria vaccine

por Webster, Rebecca, Sekuloski, Silvana, Odedra, Anand, Woolley, Stephen, Jennings, Helen, Amante, Fiona, Trenholme, Katharine R., Healer, Julie, Cowman, Alan F., Eriksson, Emily M., Sathe, Priyanka, Penington, Jocelyn, Blanch, Adam J., Dixon, Matthew W. A., Tilley, Leann, Duffy, Michael F., Craig, Alister, Storm, Janet, Chan, Jo-Anne, Evans, Krystal, Papenfuss, Anthony T., Schofield, Louis, Griffin, Paul, Barber, Bridget E., Andrew, Dean, Boyle, Michelle J., de Labastida Rivera, Fabian, Engwerda, Christian, McCarthy, James S.
Publicado 2021

NLRP1 restricts butyrate producing commensals to exacerbate inflammatory bowel disease

por Tye, Hazel, Yu, Chien-Hsiung, Simms, Lisa A., de Zoete, Marcel R., Kim, Man Lyang, Zakrzewski, Martha, Penington, Jocelyn S., Harapas, Cassandra R., Souza-Fonseca-Guimaraes, Fernando, Wockner, Leesa F., Preaudet, Adele, Mielke, Lisa A., Wilcox, Stephen A., Ogura, Yasunori, Corr, Sinead C., Kanojia, Komal, Kouremenos, Konstantinos A., De Souza, David P., McConville, Malcolm J., Flavell, Richard A., Gerlic, Motti, Kile, Benjamin T., Papenfuss, Anthony T., Putoczki, Tracy L., Radford-Smith, Graham L., Masters, Seth L.
Publicado 2018

BRCA1 secondary splice-site mutations drive exon-skipping and PARP inhibitor resistance

por Nesic, Ksenija, Krais, John J., Vandenberg, Cassandra J., Wang, Yifan, Patel, Pooja, Cai, Kathy Q., Kwan, Tanya, Lieschke, Elizabeth, Ho, Gwo-Yaw, Barker, Holly E., Bedo, Justin, Casadei, Silvia, Farrell, Andrew, Radke, Marc, Shield-Artin, Kristy, Penington, Jocelyn S., Geissler, Franziska, Kyran, Elizabeth, Zhang, Fan, Dobrovic, Alexander, Olesen, Inger, Kristeleit, Rebecca, Oza, Amit, Ratnayake, Gayanie, Traficante, Nadia, DeFazio, Anna, Bowtell, David D. L., Harding, Thomas C., Lin, Kevin, Swisher, Elizabeth M., Kondrashova, Olga, Scott, Clare L., Johnson, Neil, Wakefield, Matthew J.
Publicado 2023

Dual Plasmepsin-Targeting Antimalarial Agents Disrupt Multiple Stages of the Malaria Parasite Life Cycle

por Favuzza, Paola, de Lera Ruiz, Manuel, Thompson, Jennifer K., Triglia, Tony, Ngo, Anna, Steel, Ryan W.J., Vavrek, Marissa, Christensen, Janni, Healer, Julie, Boyce, Christopher, Guo, Zhuyan, Hu, Mengwei, Khan, Tanweer, Murgolo, Nicholas, Zhao, Lianyun, Penington, Jocelyn Sietsma, Reaksudsan, Kitsanapong, Jarman, Kate, Dietrich, Melanie H., Richardson, Lachlan, Guo, Kai-Yuan, Lopaticki, Sash, Tham, Wai-Hong, Rottmann, Matthias, Papenfuss, Tony, Robbins, Jonathan A., Boddey, Justin A., Sleebs, Brad E., Sabroux, Hélène Jousset, McCauley, John A., Olsen, David B., Cowman, Alan F.
Publicado 2020

A G358S mutation in the Plasmodium falciparum Na(+) pump PfATP4 confers clinically-relevant resistance to cipargamin

por Qiu, Deyun, Pei, Jinxin V., Rosling, James E. O., Thathy, Vandana, Li, Dongdi, Xue, Yi, Tanner, John D., Penington, Jocelyn Sietsma, Aw, Yi Tong Vincent, Aw, Jessica Yi Han, Xu, Guoyue, Tripathi, Abhai K., Gnadig, Nina F., Yeo, Tomas, Fairhurst, Kate J., Stokes, Barbara H., Murithi, James M., Kümpornsin, Krittikorn, Hasemer, Heath, Dennis, Adelaide S. M., Ridgway, Melanie C., Schmitt, Esther K., Straimer, Judith, Papenfuss, Anthony T., Lee, Marcus C. S., Corry, Ben, Sinnis, Photini, Fidock, David A., van Dooren, Giel G., Kirk, Kiaran, Lehane, Adele M.
Publicado 2022

Targeting homologous recombination deficiency in uterine leiomyosarcoma

por Dall, Genevieve, Vandenberg, Cassandra J., Nesic, Ksenija, Ratnayake, Gayanie, Zhu, Wenying, Vissers, Joseph H. A., Bedő, Justin, Penington, Jocelyn, Wakefield, Matthew J., Kee, Damien, Carmagnac, Amandine, Lim, Ratana, Shield-Artin, Kristy, Milesi, Briony, Lobley, Amanda, Kyran, Elizabeth L., O’Grady, Emily, Tram, Joshua, Zhou, Warren, Nugawela, Devindee, Stewart, Kym Pham, Caldwell, Reece, Papadopoulos, Lia, Ng, Ashley P., Dobrovic, Alexander, Fox, Stephen B., McNally, Orla, Power, Jeremy D., Meniawy, Tarek, Tan, Teng Han, Collins, Ian M., Klein, Oliver, Barnett, Stephen, Olesen, Inger, Hamilton, Anne, Hofmann, Oliver, Grimmond, Sean, Papenfuss, Anthony T., Scott, Clare L., Barker, Holly E.
Publicado 2023