Physical properties of the HIV-1 capsid from all-atom molecular dynamics simulations

por Perilla, Juan R., Schulten, Klaus
Publicado 2017

Performance efficient macromolecular mechanics via sub-nanometer shape based coarse graining

por Bryer, Alexander J., Rey, Juan S., Perilla, Juan R.
Publicado 2023

Full scale structural, mechanical and dynamical properties of HIV-1 liposomes

por Bryer, Alexander J., Reddy, Tyler, Lyman, Edward, Perilla, Juan R.
Publicado 2022

High-Performance Analysis of Biomolecular Containers to Measure Small-Molecule Transport, Transbilayer Lipid Diffusion, and Protein Cavities

por Bryer, Alexander J., Hadden-Perilla, Jodi A., Stone, John E., Perilla, Juan R.
Publicado 2019

All-Atom Molecular Dynamics of Virus Capsids as Drug Targets

por Perilla, Juan R., Hadden, Jodi A., Goh, Boon Chong, Mayne, Christopher G., Schulten, Klaus
Publicado 2016

All-atom molecular dynamics of the HBV capsid reveals insights into biological function and cryo-EM resolution limits

por Hadden, Jodi A, Perilla, Juan R, Schlicksup, Christopher John, Venkatakrishnan, Balasubramanian, Zlotnick, Adam, Schulten, Klaus
Publicado 2018

Accelerating prediction of chemical shift of protein structures on GPUs: Using OpenACC

por Wright, Eric, Ferrato, Mauricio H., Bryer, Alexander J., Searles, Robert, Perilla, Juan R., Chandrasekaran, Sunita
Publicado 2020

Scalable Analysis of Authentic Viral Envelopes on FRONTERA

por González-Arias, Fabio, Reddy, Tyler, Stone, John E., Hadden-Perilla, Jodi A., Perilla, Juan R.
Publicado 2020

Deep-learning in situ classification of HIV-1 virion morphology

por Rey, Juan S., Li, Wen, Bryer, Alexander J., Beatson, Hagan, Lantz, Christian, Engelman, Alan N., Perilla, Juan R.
Publicado 2021

Length of encapsidated cargo impacts stability and structure of in vitro assembled alphavirus core-like particles

por Rayaprolu, Vamseedhar, Moore, Alan, Wang, Joseph Che-Yen, Goh, Boon Chong, Perilla, Juan R, Zlotnick, Adam, Mukhopadhyay, Suchetana
Publicado 2017

Coronavirus through Delaware’s Computational Microscope

por Segura, Carolina Pérez, Katyal, Nidhi, González-Arias, Fabio, Bryer, Alexander J., Perilla, Juan R., Hadden-Perilla, Jodi A.
Publicado 2020

Magic angle spinning NMR structure of human cofilin-2 assembled on actin filaments reveals isoform-specific conformation and binding mode

por Kraus, Jodi, Russell, Ryan W., Kudryashova, Elena, Xu, Chaoyi, Katyal, Nidhi, Perilla, Juan R., Kudryashov, Dmitri S., Polenova, Tatyana
Publicado 2022

CryoEM and computer simulations reveal a novel kinase conformational switch in bacterial chemotaxis signaling

por Cassidy, C Keith, Himes, Benjamin A, Alvarez, Frances J, Ma, Jun, Zhao, Gongpu, Perilla, Juan R, Schulten, Klaus, Zhang, Peijun
Publicado 2015

CryoEM structure of MxB reveals a novel oligomerization interface critical for HIV restriction

por Alvarez, Frances J. D., He, Shaoda, Perilla, Juan R., Jang, Sooin, Schulten, Klaus, Engelman, Alan N., Scheres, Sjors H. W., Zhang, Peijun
Publicado 2017

HIV-1 mutants that escape the cytotoxic T-lymphocytes are defective in viral DNA integration

por Balasubramaniam, Muthukumar, Davids, Benem-Orom, Bryer, Alex, Xu, Chaoyi, Thapa, Santosh, Shi, Jiong, Aiken, Christopher, Pandhare, Jui, Perilla, Juan R, Dash, Chandravanu
Publicado 2022

Molecular architecture and conservation of an immature human endogenous retrovirus

por Krebs, Anna-Sophia, Liu, Hsuan-Fu, Zhou, Ye, Rey, Juan S., Levintov, Lev, Shen, Juan, Howe, Andrew, Perilla, Juan R., Bartesaghi, Alberto, Zhang, Peijun
Publicado 2023

Molecular architecture and conservation of an immature human endogenous retrovirus

por Krebs, Anna-Sophia, Liu, Hsuan-Fu, Zhou, Ye, Rey, Juan S., Levintov, Lev, Shen, Juan, Howe, Andrew, Perilla, Juan R., Bartesaghi, Alberto, Zhang, Peijun
Publicado 2023

Structural basis for the homotypic fusion of chlamydial inclusions by the SNARE-like protein IncA

por Cingolani, Gino, McCauley, Michael, Lobley, Anna, Bryer, Alexander J., Wesolowski, Jordan, Greco, Deanna L., Lokareddy, Ravi K., Ronzone, Erik, Perilla, Juan R., Paumet, Fabienne
Publicado 2019

Atomic-resolution structure of HIV-1 capsid tubes by magic-angle spinning NMR

por Lu, Manman, Russell, Ryan W., Bryer, Alex, Quinn, Caitlin M., Hou, Guangjin, Zhang, Huilan, Schwieters, Charles D., Perilla, Juan R., Gronenborn, Angela M., Polenova, Tatyana
Publicado 2020

Recognition of the TDP-43 nuclear localization signal by importin α1/β

por Doll, Steven G., Meshkin, Hamed, Bryer, Alexander J., Li, Fenglin, Ko, Ying-Hui, Lokareddy, Ravi K., Gillilan, Richard E., Gupta, Kushol, Perilla, Juan R., Cingolani, Gino
Publicado 2022