Re-sampling strategy to improve the estimation of number of null hypotheses in FDR control under strong correlation structures

por Lu, Xin, Perkins, David L
Publicado 2007

Multiomic Strategies Reveal Diversity and Important Functional Aspects of Human Gut Microbiome

por Ranjan, Ravi, Rani, Asha, Finn, Patricia W., Perkins, David L.
Publicado 2018

Hubs in biological interaction networks exhibit low changes in expression in experimental asthma

por Lu, Xin, Jain, Vipul V, Finn, Patricia W, Perkins, David L
Publicado 2007

Precision Subtypes of T Cell-Mediated Rejection Identified by Molecular Profiles

por Kadota, Paul Ostrom, Hajjiri, Zahraa, Finn, Patricia W., Perkins, David L.
Publicado 2015

WEVOTE: Weighted Voting Taxonomic Identification Method of Microbial Sequences

por Metwally, Ahmed A., Dai, Yang, Finn, Patricia W., Perkins, David L.
Publicado 2016

Imaging systems and algorithms to analyze biological samples in real-time using mobile phone microscopy

por Shanmugam, Akshaya, Usmani, Mohammad, Mayberry, Addison, Perkins, David L., Holcomb, Daniel E.
Publicado 2018

Effect of the Obesity Epidemic on Kidney Transplantation: Obesity Is Independent of Diabetes as a Risk Factor for Adverse Renal Transplant Outcomes

por Kwan, Jennifer M., Hajjiri, Zahraa, Metwally, Ahmed, Finn, Patricia W., Perkins, David L.
Publicado 2016

Complete Genome Sequence of BK Polyomavirus Subtype Ib-1 Detected in a Kidney Transplant Patient with BK Viremia Using Shotgun Sequencing

por Ranjan, Ravi, Rani, Asha, Brennan, Daniel C., Finn, Patricia W., Perkins, David L.
Publicado 2017

Long non-coding RNAs (lncRNAs) NEAT1 and MALAT1 are differentially expressed in severe COVID-19 patients: An integrated single cell analysis

por Huang, Kai, Wang, Catherine, Vagts, Christen, Raguveer, Vanitha, Finn, Patricia W., Perkins, David L.
Publicado 2021

Long non-coding RNAs (lncRNAs) NEAT1 and MALAT1 are differentially expressed in severe COVID-19 patients: An integrated single-cell analysis

por Huang, Kai, Wang, Catherine, Vagts, Christen, Raguveer, Vanitha, Finn, Patricia W., Perkins, David L.
Publicado 2022

MetaLonDA: a flexible R package for identifying time intervals of differentially abundant features in metagenomic longitudinal studies

por Metwally, Ahmed A., Yang, Jie, Ascoli, Christian, Dai, Yang, Finn, Patricia W., Perkins, David L.
Publicado 2018

Utilizing longitudinal microbiome taxonomic profiles to predict food allergy via Long Short-Term Memory networks

por Metwally, Ahmed A., Yu, Philip S., Reiman, Derek, Dai, Yang, Finn, Patricia W., Perkins, David L.
Publicado 2019

Abundance of Multidrug Resistance Efflux Pumps in the Urinary Metagenome of Kidney Transplant Patients

por Rani, Asha, Ranjan, Ravi, Metwally, Ahmed A., Brennan, Daniel C., Finn, Patricia W., Perkins, David L.
Publicado 2020

Transmission Dynamics of Large Coronavirus Disease Outbreak in Homeless Shelter, Chicago, Illinois, USA, 2020

por Chang, Yi-Shin, Mayer, Stockton, Davis, Elizabeth S., Figueroa, Evelyn, Leo, Paul, Finn, Patricia W., Perkins, David L.
Publicado 2022

A diverse virome in kidney transplant patients contains multiple viral subtypes with distinct polymorphisms

por Rani, Asha, Ranjan, Ravi, McGee, Halvor S., Metwally, Ahmed, Hajjiri, Zahraa, Brennan, Daniel C., Finn, Patricia W., Perkins, David L.
Publicado 2016

Gene Co-expression Networks Identifies Common Hub Genes Between Cutaneous Sarcoidosis and Discoid Lupus Erythematosus

por Nickles, Melissa A., Huang, Kai, Chang, Yi-Shin, Tsoukas, Maria M., Sweiss, Nadera J., Perkins, David L., Finn, Patricia W.
Publicado 2020

Analysis of Exosomal MicroRNA Dynamics in Response to Rhinovirus Challenge in a Longitudinal Case-Control Study of Asthma

por Wang, Wangfei, Sinha, Anirban, Lutter, René, Yang, Jie, Ascoli, Christian, Sterk, Peter J., Nemsick, Nicole K., Perkins, David L., Finn, Patricia W.
Publicado 2022

Altered transcription factor targeting is associated with differential peripheral blood mononuclear cell proportions in sarcoidosis

por Ascoli, Christian, Schott, Cody A., Huang, Yue, Turturice, Benjamin A., Wang, Wangfei, Ecanow, Naomi, Sweiss, Nadera J., Perkins, David L., Finn, Patricia W.
Publicado 2022

Atopic asthmatic immune phenotypes associated with airway microbiota and airway obstruction

por Turturice, Benjamin A., McGee, Halvor S., Oliver, Brian, Baraket, Melissa, Nguyen, Brian T., Ascoli, Christian, Ranjan, Ravi, Rani, Asha, Perkins, David L., Finn, Patricia W.
Publicado 2017

(R)-albuterol decreases immune responses: role of activated T cells

por Ferrada, Marcela A, Gordon, Erin L, Jen, Kai Yu, He, Hong Zhen, Lu, Xin, Barone, Leesa M, Amirifeli, Sepideh, Perkins, David L, Finn, Patricia W
Publicado 2008