Statistical lower bounds on protein copy number from fluorescence expression images

por Zamparo, Lee, Perkins, Theodore J.
Publicado 2009

Strategies for cellular decision-making

por Perkins, Theodore J, Swain, Peter S
Publicado 2009

Functional data analysis for identifying nonlinear models of gene regulatory networks

por Summer, Georg, Perkins, Theodore J
Publicado 2010

Maximum Probability Reaction Sequences in Stochastic Chemical Kinetic Systems

por Salehi, Maryam, Perkins, Theodore J.
Publicado 2010

Adaptive bandwidth kernel density estimation for next-generation sequencing data

por Ramachandran, Parameswaran, Perkins, Theodore J
Publicado 2013

Implementing Arithmetic and Other Analytic Operations By Transcriptional Regulation

por Cory, Sean M., Perkins, Theodore J.
Publicado 2008

Robust dynamics in minimal hybrid models of genetic networks

por Perkins, Theodore J., Wilds, Roy, Glass, Leon
Publicado 2010

What do molecules do when we are not looking? State sequence analysis for stochastic chemical systems

por Levin, Pavel, Lefebvre, Jérémie, Perkins, Theodore J.
Publicado 2012

Pooled Screening for Synergistic Interactions Subject to Blocking and Noise

por Li, Kyle, Precup, Doina, Perkins, Theodore J.
Publicado 2014

WACS: improving ChIP-seq peak calling by optimally weighting controls

por Awdeh, Aseel, Turcotte, Marcel, Perkins, Theodore J.
Publicado 2021

A General Model of Codon Bias Due to GC Mutational Bias

por Palidwor, Gareth A., Perkins, Theodore J., Xia, Xuhua
Publicado 2010

Methods for Determining the Statistical Significance of Enrichment or Depletion of Gene Ontology Classifications under Weighted Membership

por Iacucci, Ernesto, Zingg, Hans H., Perkins, Theodore J.
Publicado 2012

BIDCHIPS: bias decomposition and removal from ChIP-seq data clarifies true binding signal and its functional correlates

por Ramachandran, Parameswaran, Palidwor, Gareth A., Perkins, Theodore J.
Publicado 2015

Uncovering robust patterns of microRNA co-expression across cancers using Bayesian Relevance Networks

por Ramachandran, Parameswaran, Sánchez-Taltavull, Daniel, Perkins, Theodore J.
Publicado 2017

RECAP reveals the true statistical significance of ChIP-seq peak calls

por Chitpin, Justin G, Awdeh, Aseel, Perkins, Theodore J
Publicado 2019

Reverse Engineering the Gap Gene Network of Drosophila melanogaster

por Perkins, Theodore J, Jaeger, Johannes, Reinitz, John, Glass, Leon
Publicado 2006

A scaling law for random walks on networks

por Perkins, Theodore J., Foxall, Eric, Glass, Leon, Edwards, Roderick
Publicado 2014

Bayesian Correlation Analysis for Sequence Count Data

por Sánchez-Taltavull, Daniel, Ramachandran, Parameswaran, Lau, Nelson, Perkins, Theodore J.
Publicado 2016

Human gene expression variability and its dependence on methylation and aging

por Bashkeel, Nasser, Perkins, Theodore J., Kærn, Mads, Lee, Jonathan M.
Publicado 2019

MaSC: mappability-sensitive cross-correlation for estimating mean fragment length of single-end short-read sequencing data

por Ramachandran, Parameswaran, Palidwor, Gareth A., Porter, Christopher J., Perkins, Theodore J.
Publicado 2013