IRBIS: a systematic search for conserved complementarity

por Pervouchine, Dmitri D.
Publicado 2014

Towards Long-Range RNA Structure Prediction in Eukaryotic Genes

por Pervouchine, Dmitri D.
Publicado 2018

An Evolutionary Mechanism for the Generation of Competing RNA Structures Associated with Mutually Exclusive Exons

por Ivanov, Timofei M., Pervouchine, Dmitri D.
Publicado 2018

Transcriptome sequencing suggests that pre-mRNA splicing counteracts widespread intronic cleavage and polyadenylation

por Vlasenok, Maria, Margasyuk, Sergey, Pervouchine, Dmitri D
Publicado 2023

Intron-centric estimation of alternative splicing from RNA-seq data

por Pervouchine, Dmitri D., Knowles, David G., Guigó, Roderic
Publicado 2013

Modulation of alternative splicing by long-range RNA structures in Drosophila

por Raker, Veronica A., Mironov, Andrei A., Gelfand, Mikhail S., Pervouchine, Dmitri D.
Publicado 2009

Transcriptome analysis reveals high tumor heterogeneity with respect to re-activation of stemness and proliferation programs

por Baranovsky, Artem, Ivanov, Timofei, Granovskaya, Marina, Papatsenko, Dmitri, Pervouchine, Dmitri D.
Publicado 2022

An extended catalogue of tandem alternative splice sites in human tissue transcriptomes

por Mironov, Aleksei, Denisov, Stepan, Gress, Alexander, Kalinina, Olga V., Pervouchine, Dmitri D.
Publicado 2021

RNA in situ conformation sequencing reveals novel long-range RNA structures with impact on splicing

por Margasyuk, Sergey, Kalinina, Marina, Petrova, Marina, Skvortsov, Dmitry, Cao, Changchang, Pervouchine, Dmitri D.
Publicado 2023

Multiple competing RNA structures dynamically control alternative splicing in the human ATE1 gene

por Kalinina, Marina, Skvortsov, Dmitry, Kalmykova, Svetlana, Ivanov, Timofei, Dontsova, Olga, Pervouchine, Dmitri D
Publicado 2020

Tissue-specific regulation of gene expression via unproductive splicing

por Mironov, Alexei, Petrova, Marina, Margasyuk, Sergey, Vlasenok, Maria, Mironov, Andrey A, Skvortsov, Dmitry, Pervouchine, Dmitri D
Publicado 2023

Gene-specific patterns of expression variation across organs and species

por Breschi, Alessandra, Djebali, Sarah, Gillis, Jesse, Pervouchine, Dmitri D., Dobin, Alex, Davis, Carrie A., Gingeras, Thomas R., Guigó, Roderic
Publicado 2016

A limited set of transcriptional programs define major cell types

por Breschi, Alessandra, Muñoz-Aguirre, Manuel, Wucher, Valentin, Davis, Carrie A., Garrido-Martín, Diego, Djebali, Sarah, Gillis, Jesse, Pervouchine, Dmitri D., Vlasova, Anna, Dobin, Alexander, Zaleski, Chris, Drenkow, Jorg, Danyko, Cassidy, Scavelli, Alexandra, Reverter, Ferran, Snyder, Michael P., Gingeras, Thomas R., Guigó, Roderic
Publicado 2020

Enhanced transcriptome maps from multiple mouse tissues reveal evolutionary constraint in gene expression

por Pervouchine, Dmitri D., Djebali, Sarah, Breschi, Alessandra, Davis, Carrie A., Barja, Pablo Prieto, Dobin, Alex, Tanzer, Andrea, Lagarde, Julien, Zaleski, Chris, See, Lei-Hoon, Fastuca, Meagan, Drenkow, Jorg, Wang, Huaien, Bussotti, Giovanni, Pei, Baikang, Balasubramanian, Suganthi, Monlong, Jean, Harmanci, Arif, Gerstein, Mark, Beer, Michael A., Notredame, Cedric, Guigó, Roderic, Gingeras, Thomas R.
Publicado 2015

A comparative encyclopedia of DNA elements in the mouse genome

por Yue, Feng, Cheng, Yong, Breschi, Alessandra, Vierstra, Jeff, Wu, Weisheng, Ryba, Tyrone, Sandstrom, Richard, Ma, Zhihai, Davis, Carrie, Pope, Benjamin D., Shen, Yin, Pervouchine, Dmitri D., Djebali, Sarah, Thurman, Robert E., Kaul, Rajinder, Rynes, Eric, Kirilusha, Anthony, Marinov, Georgi K., Williams, Brian A., Trout, Diane, Amrhein, Henry, Fisher-Aylor, Katherine, Antoshechkin, Igor, DeSalvo, Gilberto, See, Lei-Hoon, Fastuca, Meagan, Drenkow, Jorg, Zaleski, Chris, Dobin, Alex, Prieto, Pablo, Lagarde, Julien, Bussotti, Giovanni, Tanzer, Andrea, Denas, Olgert, Li, Kanwei, Bender, M. A., Zhang, Miaohua, Byron, Rachel, Groudine, Mark T., McCleary, David, Pham, Long, Ye, Zhen, Kuan, Samantha, Edsall, Lee, Wu, Yi-Chieh, Rasmussen, Matthew D., Bansal, Mukul S., Kellis, Manolis, Keller, Cheryl A., Morrissey, Christapher S., Mishra, Tejaswini, Jain, Deepti, Dogan, Nergiz, Harris, Robert S., Cayting, Philip, Kawli, Trupti, Boyle, Alan P., Euskirchen, Ghia, Kundaje, Anshul, Lin, Shin, Lin, Yiing, Jansen, Camden, Malladi, Venkat S., Cline, Melissa S., Erickson, Drew T., Kirkup, Vanessa M., Learned, Katrina, Sloan, Cricket A., Rosenbloom, Kate R., Lacerda de Sousa, Beatriz, Beal, Kathryn, Pignatelli, Miguel, Flicek, Paul, Lian, Jin, Kahveci, Tamer, Lee, Dongwon, James Kent, W., Ramalho Santos, Miguel, Herrero, Javier, Notredame, Cedric, Johnson, Audra, Vong, Shinny, Lee, Kristen, Bates, Daniel, Neri, Fidencio, Diegel, Morgan, Canfield, Theresa, Sabo, Peter J., Wilken, Matthew S., Reh, Thomas A., Giste, Erika, Shafer, Anthony, Kutyavin, Tanya, Haugen, Eric, Dunn, Douglas, Reynolds, Alex P., Neph, Shane, Humbert, Richard, Scott Hansen, R., De Bruijn, Marella, Selleri, Licia, Rudensky, Alexander, Josefowicz, Steven, Samstein, Robert, Eichler, Evan E., Orkin, Stuart H., Levasseur, Dana, Papayannopoulou, Thalia, Chang, Kai-Hsin, Skoultchi, Arthur, Gosh, Srikanta, Disteche, Christine, Treuting, Piper, Wang, Yanli, Weiss, Mitchell J., Blobel, Gerd A., Cao, Xiaoyi, Zhong, Sheng, Wang, Ting, Good, Peter J., Lowdon, Rebecca F., Adams, Leslie B., Zhou, Xiao-Qiao, Pazin, Michael J., Feingold, Elise A., Wold, Barbara, Taylor, James, Mortazavi, Ali, Weissman, Sherman M., Stamatoyannopoulos, John A., Snyder, Michael P., Guigo, Roderic, Gingeras, Thomas R., Gilbert, David M., Hardison, Ross C., Beer, Michael A., Ren, Bing
Publicado 2014