An end-to-end heterogeneous graph attention network for Mycobacterium tuberculosis drug-resistance prediction

por Yang, Yang, Walker, Timothy M, Kouchaki, Samaneh, Wang, Chenyang, Peto, Timothy E A, Crook, Derrick W, Clifton, David A
Publicado 2021

Multi-Label Random Forest Model for Tuberculosis Drug Resistance Classification and Mutation Ranking

por Kouchaki, Samaneh, Yang, Yang, Lachapelle, Alexander, Walker, Timothy M., Walker, A. Sarah, Peto, Timothy E. A., Crook, Derrick W., Clifton, David A.
Publicado 2020

Flanker: a tool for comparative genomics of gene flanking regions

por Matlock, William, Lipworth, Samuel, Constantinides, Bede, Peto, Timothy E. A., Walker, A. Sarah, Crook, Derrick, Hopkins, Susan, Shaw, Liam P., Stoesser, Nicole
Publicado 2021

Application of machine learning techniques to tuberculosis drug resistance analysis

por Kouchaki, Samaneh, Yang, Yang, Walker, Timothy M, Sarah Walker, A, Wilson, Daniel J, Peto, Timothy E A, Crook, Derrick W, Clifton, David A
Publicado 2019

Dynamics of acquisition and loss of carriage of Staphylococcus aureus strains in the community: The effect of clonal complex()()

por Miller, Ruth R., Walker, A. Sarah, Godwin, Heather, Fung, Rowena, Votintseva, Antonina, Bowden, Rory, Mant, David, Peto, Timothy E.A., Crook, Derrick W., Knox, Kyle
Publicado 2014

DeepAMR for predicting co-occurrent resistance of Mycobacterium tuberculosis

por Yang, Yang, Walker, Timothy M, Walker, A Sarah, Wilson, Daniel J, Peto, Timothy E A, Crook, Derrick W, Shamout, Farah, Zhu, Tingting, Clifton, David A
Publicado 2019

Using linked electronic health records to report healthcare-associated infections

por Quan, T. Phuong, Hope, Russell, Clarke, Tiphanie, Moroney, Ruth, Butcher, Lisa, Knight, Peter, Crook, Derrick, Hopkins, Susan, Peto, Timothy E. A., Johnson, Alan P., Walker, A. Sarah
Publicado 2018

Increasing burden of community-acquired pneumonia leading to hospitalisation, 1998–2014

por Quan, T Phuong, Fawcett, Nicola J, Wrightson, John M, Finney, John, Wyllie, David, Jeffery, Katie, Jones, Nicola, Shine, Brian, Clarke, Lorraine, Crook, Derrick, Walker, A Sarah, Peto, Timothy E A
Publicado 2016

Predictors of First Recurrence of Clostridium difficile Infection: Implications for Initial Management

por Eyre, David W., Walker, A. Sarah, Wyllie, David, Dingle, Kate E., Griffiths, David, Finney, John, O'Connor, Lily, Vaughan, Alison, Crook, Derrick W., Wilcox, Mark H., Peto, Timothy E. A.
Publicado 2012

Whole-Genome Sequencing Shows That Patient-to-Patient Transmission Rarely Accounts for Acquisition of Staphylococcus aureus in an Intensive Care Unit

por Price, James R., Golubchik, Tanya, Cole, Kevin, Wilson, Daniel J., Crook, Derrick W., Thwaites, Guy E., Bowden, Rory, Walker, A. Sarah, Peto, Timothy E. A., Paul, John, Llewelyn, Martin J.
Publicado 2014

Patient and Strain Characteristics Associated With Clostridium difficile Transmission and Adverse Outcomes

por Martin, Jessica S H, Eyre, David W, Fawley, Warren N, Griffiths, David, Davies, Kerrie, Mawer, Damian P C, Peto, Timothy E A, Crook, Derrick W, Walker, A Sarah, Wilcox, Mark H
Publicado 2018

Risk Factors Associated with Carbapenemase-Producing Enterobacterales (CPE) Positivity in the Hospital Wastewater Environment

por Park, Stacy C., Parikh, Hardik, Vegesana, Kasi, Stoesser, Nicole, Barry, Katie E., Kotay, Shireen M., Dudley, Sarah, Peto, Timothy E. A., Crook, Derrick W., Walker, A. Sarah, Mathers, Amy J.
Publicado 2020

Mycobacterium tuberculosis transmission in Birmingham, UK, 2009–19: An observational study

por Walker, Timothy M., Choisy, Marc, Dedicoat, Martin, Drennan, Philip G., Wyllie, David, Yang-Turner, Fan, Crook, Derrick W., Robinson, Esther R., Walker, A. Sarah, Smith, E. Grace, Peto, Timothy E.A.
Publicado 2022

Transmission of Staphylococcus aureus between health-care workers, the environment, and patients in an intensive care unit: a longitudinal cohort study based on whole-genome sequen...

por Price, James R, Cole, Kevin, Bexley, Andrew, Kostiou, Vasiliki, Eyre, David W, Golubchik, Tanya, Wilson, Daniel J, Crook, Derrick W, Walker, A Sarah, Peto, Timothy E A, Llewelyn, Martin J, Paul, John
Publicado 2017

DNA Thermo-Protection Facilitates Whole-Genome Sequencing of Mycobacteria Direct from Clinical Samples

por George, Sophie, Xu, Yifei, Rodger, Gillian, Morgan, Marcus, Sanderson, Nicholas D., Hoosdally, Sarah J., Thulborn, Samantha, Robinson, Esther, Rathod, Priti, Walker, A. Sarah, Peto, Timothy E. A., Crook, Derrick W., Dingle, Kate E.
Publicado 2020

Optimized use of Oxford Nanopore flowcells for hybrid assemblies

por Lipworth, Samuel, Pickford, Hayleah, Sanderson, Nicholas, Chau, Kevin K., Kavanagh, James, Barker, Leanne, Vaughan, Alison, Swann, Jeremy, Andersson, Monique, Jeffery, Katie, Morgan, Marcus, Peto, Timothy E. A., Crook, Derrick W., Stoesser, Nicole, Walker, A. Sarah
Publicado 2020

Evaluation of Whole-Genome Sequencing for Mycobacterial Species Identification and Drug Susceptibility Testing in a Clinical Setting: a Large-Scale Prospective Assessment of Perfor...

por Quan, T. Phuong, Bawa, Zharain, Foster, Dona, Walker, Tim, del Ojo Elias, Carlos, Rathod, Priti, Iqbal, Zamin, Bradley, Phelim, Mowbray, Janet, Walker, A. Sarah, Crook, Derrick W., Wyllie, David H., Peto, Timothy E. A., Smith, E. Grace
Publicado 2018

Validating a 14-Drug Microtiter Plate Containing Bedaquiline and Delamanid for Large-Scale Research Susceptibility Testing of Mycobacterium tuberculosis

por Rancoita, Paola M. V., Cugnata, Federica, Gibertoni Cruz, Ana Luíza, Borroni, Emanuele, Hoosdally, Sarah J., Walker, Timothy M., Grazian, Clara, Davies, Timothy J., Peto, Timothy E. A., Crook, Derrick W., Fowler, Philip W., Cirillo, Daniela M.
Publicado 2018

Fidaxomicin Versus Vancomycin for Clostridium difficile Infection: Meta-analysis of Pivotal Randomized Controlled Trials

por Crook, Derrick W., Walker, A. Sarah, Kean, Yin, Weiss, Karl, Cornely, Oliver A., Miller, Mark A., Esposito, Roberto, Louie, Thomas J., Stoesser, Nicole E., Young, Bernadette C., Angus, Brian J., Gorbach, Sherwood L., Peto, Timothy E. A.
Publicado 2012

Ten Years of Population-Level Genomic Escherichia coli and Klebsiella pneumoniae Serotype Surveillance Informs Vaccine Development for Invasive Infections

por Lipworth, Samuel, Vihta, Karina-Doris, Chau, Kevin K, Kavanagh, James, Davies, Timothy, George, Sophie, Barker, Leanne, Vaughan, Ali, Andersson, Monique, Jeffery, Katie, Oakley, Sarah, Morgan, Marcus, Peto, Timothy E A, Crook, Derrick W, Walker, A Sarah, Stoesser, Nicole
Publicado 2021