ICC-CLASS: isotopically-coded cleavable crosslinking analysis software suite

por Petrotchenko, Evgeniy V, Borchers, Christoph H
Publicado 2010

Amino acid analysis for peptide quantitation using reversed-phase liquid chromatography combined with multiple reaction monitoring mass spectrometry

por Qasrawi, Deema O., Petrotchenko, Evgeniy V., Borchers, Christoph H.
Publicado 2023

Crystallographic analysis of a hydroxylated polychlorinated biphenyl (OH-PCB) bound to the catalytic estrogen binding site of human estrogen sulfotransferase.

por Shevtsov, Sergei, Petrotchenko, Evgeniy V, Pedersen, Lars C, Negishi, Masahiko
Publicado 2003

Determination of Protein Monoclonal–Antibody Epitopes by a Combination of Structural Proteomics Methods

por Petrotchenko, Evgeniy V., Nascimento, Elisabete M., Witt, Jody Melton, Borchers, Christoph H.
Publicado 2023

Expression and purification of the full murine NPM2 and study of its interaction with protamines and histones

por Ellard, Katherine, Serpa, Jason J., Petrotchenko, Evgeniy V., Borchers, Christoph H., Ausió, Juan
Publicado 2016

Solving protein structures using short-distance cross-linking constraints as a guide for discrete molecular dynamics simulations

por Brodie, Nicholas I., Popov, Konstantin I., Petrotchenko, Evgeniy V., Dokholyan, Nikolay V., Borchers, Christoph H.
Publicado 2017

Conformational ensemble of native α-synuclein in solution as determined by short-distance crosslinking constraint-guided discrete molecular dynamics simulations

por Brodie, Nicholas I., Popov, Konstantin I., Petrotchenko, Evgeniy V., Dokholyan, Nikolay V., Borchers, Christoph H.
Publicado 2019

Structure of prion β‐oligomers as determined by short‐distance crosslinking constraint‐guided discrete molecular dynamics simulations

por Serpa, Jason J., Popov, Konstantin I., Petrotchenko, Evgeniy V., Dokholyan, Nikolay V., Borchers, Christoph H.
Publicado 2021

Model of the Mediator middle module based on protein cross-linking

por Larivière, Laurent, Plaschka, Clemens, Seizl, Martin, Petrotchenko, Evgeniy V., Wenzeck, Larissa, Borchers, Christoph H., Cramer, Patrick
Publicado 2013

The prolyl isomerase, FKBP25, interacts with RNA-engaged nucleolin and the pre-60S ribosomal subunit

por Gudavicius, Geoff, Dilworth, David, Serpa, Jason J., Sessler, Nicole, Petrotchenko, Evgeniy V., Borchers, Christoph H., Nelson, Christopher J.
Publicado 2014

A protocol for identifying the binding sites of small molecules on the cystic fibrosis transmembrane conductance regulator (CFTR) protein

por Laselva, Onofrio, Petrotchenko, Evgeniy V., Hamilton, C. Michael, Qureshi, Zafar, Borchers, Christoph H., Young, Robert N., Bear, Christine E.
Publicado 2022

Super Spy variants implicate flexibility in chaperone action

por Quan, Shu, Wang, Lili, Petrotchenko, Evgeniy V, Makepeace, Karl AT, Horowitz, Scott, Yang, Jianyi, Zhang, Yang, Borchers, Christoph H, Bardwell, James CA
Publicado 2014

Protein unfolding as a switch from self-recognition to high-affinity client binding

por Groitl, Bastian, Horowitz, Scott, Makepeace, Karl A. T., Petrotchenko, Evgeniy V., Borchers, Christoph H., Reichmann, Dana, Bardwell, James C. A., Jakob, Ursula
Publicado 2016

Improving Identification of In-organello Protein-Protein Interactions Using an Affinity-enrichable, Isotopically Coded, and Mass Spectrometry-cleavable Chemical Crosslinker

por Makepeace, Karl A. T., Mohammed, Yassene, Rudashevskaya, Elena L., Petrotchenko, Evgeniy V., Vögtle, F.-Nora, Meisinger, Chris, Sickmann, Albert, Borchers, Christoph H.
Publicado 2020

Identification of binding sites for ivacaftor on the cystic fibrosis transmembrane conductance regulator

por Laselva, Onofrio, Qureshi, Zafar, Zeng, Zhi-Wei, Petrotchenko, Evgeniy V., Ramjeesingh, Mohabir, Hamilton, C. Michael, Huan, Ling-Jun, Borchers, Christoph H., Pomès, Régis, Young, Robert, Bear, Christine E.
Publicado 2021

The basic tilted helix bundle domain of the prolyl isomerase FKBP25 is a novel double-stranded RNA binding module

por Dilworth, David, Upadhyay, Santosh K., Bonnafous, Pierre, Edoo, Amiirah Bibi, Bourbigot, Sarah, Pesek-Jardim, Francy, Gudavicius, Geoff, Serpa, Jason J., Petrotchenko, Evgeniy V., Borchers, Christoph H., Nelson, Christopher J., Mackereth, Cameron D.
Publicado 2017

MeCP2 binds to nucleosome free (linker DNA) regions and to H3K9/H3K27 methylated nucleosomes in the brain

por Thambirajah, Anita A., Ng, Marlee K., Frehlick, Lindsay J., Li, Andra, Serpa, Jason J., Petrotchenko, Evgeniy V., Silva-Moreno, Begonia, Missiaen, Kristal K., Borchers, Christoph H., Adam Hall, J., Mackie, Ryan, Lutz, Frank, Gowen, Brent E., Hendzel, Michael, Georgel, Philippe T., Ausió, Juan
Publicado 2012

Pressure overload induces ISG15 to facilitate adverse ventricular remodeling and promote heart failure

por Yerra, Veera Ganesh, Batchu, Sri Nagarjun, Kaur, Harmandeep, Kabir, MD Golam, Liu, Youan, Advani, Suzanne L., Tran, Duc Tin, Sadeghian, Shadi, Sedrak, Phelopater, Billia, Filio, Kuzmanov, Uros, Gramolini, Anthony O., Qasrawi, Deema O., Petrotchenko, Evgeniy V., Borchers, Christoph H., Connelly, Kim A., Advani, Andrew
Publicado 2023

MeCP2-E1 isoform is a dynamically expressed, weakly DNA-bound protein with different protein and DNA interactions compared to MeCP2-E2

por Martínez de Paz, Alexia, Khajavi, Leila, Martin, Hélène, Claveria-Gimeno, Rafael, Tom Dieck, Susanne, Cheema, Manjinder S., Sanchez-Mut, Jose V., Moksa, Malgorzata M., Carles, Annaick, Brodie, Nick I., Sheikh, Taimoor I., Freeman, Melissa E., Petrotchenko, Evgeniy V., Borchers, Christoph H., Schuman, Erin M., Zytnicki, Matthias, Velazquez-Campoy, Adrian, Abian, Olga, Hirst, Martin, Esteller, Manel, Vincent, John B., Malnou, Cécile E., Ausió, Juan
Publicado 2019

First Community-Wide, Comparative Cross-Linking Mass Spectrometry Study

por Iacobucci, Claudio, Piotrowski, Christine, Aebersold, Ruedi, Amaral, Bruno C., Andrews, Philip, Bernfur, Katja, Borchers, Christoph, Brodie, Nicolas I., Bruce, James E., Cao, Yong, Chaignepain, Stéphane, Chavez, Juan D., Claverol, Stéphane, Cox, Jürgen, Davis, Trisha, Degliesposti, Gianluca, Dong, Meng-Qiu, Edinger, Nufar, Emanuelsson, Cecilia, Gay, Marina, Götze, Michael, Gomes-Neto, Francisco, Gozzo, Fabio C., Gutierrez, Craig, Haupt, Caroline, Heck, Albert J. R., Herzog, Franz, Huang, Lan, Hoopmann, Michael R., Kalisman, Nir, Klykov, Oleg, Kukačka, Zdeněk, Liu, Fan, MacCoss, Michael J., Mechtler, Karl, Mesika, Ravit, Moritz, Robert L., Nagaraj, Nagarjuna, Nesati, Victor, Neves-Ferreira, Ana G. C., Ninnis, Robert, Novák, Petr, O’Reilly, Francis J., Pelzing, Matthias, Petrotchenko, Evgeniy, Piersimoni, Lolita, Plasencia, Manolo, Pukala, Tara, Rand, Kasper D., Rappsilber, Juri, Reichmann, Dana, Sailer, Carolin, Sarnowski, Chris P., Scheltema, Richard A., Schmidt, Carla, Schriemer, David C., Shi, Yi, Skehel, J. Mark, Slavin, Moriya, Sobott, Frank, Solis-Mezarino, Victor, Stephanowitz, Heike, Stengel, Florian, Stieger, Christian E., Trabjerg, Esben, Trnka, Michael, Vilaseca, Marta, Viner, Rosa, Xiang, Yufei, Yilmaz, Sule, Zelter, Alex, Ziemianowicz, Daniel, Leitner, Alexander, Sinz, Andrea
Publicado 2019