The Time to Most Recent Common Ancestor Does Not (Usually) Approximate the Date of Divergence

por Pettengill, James B.
Publicado 2015

Segal’s Law, 16S rRNA gene sequencing, and the perils of foodborne pathogen detection within the American Gut Project

por Pettengill, James B., Rand, Hugh
Publicado 2017

Phylogenetic patterns and conservation among North American members of the genus Agalinis (Orobanchaceae)

por Pettengill, James B, Neel, Maile C
Publicado 2008

Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Does Not Suppor...

por Pettengill, Emily A., Pettengill, James B., Binet, Rachel
Publicado 2016

Corrigendum: Phylogenetic Analyses of Shigella and Enteroinvasive Escherichia coli for the Identification of Molecular Epidemiological Markers: Whole-Genome Comparative Analysis Do...

por Pettengill, Emily A., Pettengill, James B., Binet, Rachel
Publicado 2018

Elucidating the evolutionary history and expression patterns of nucleoside phosphorylase paralogs (vegetative storage proteins) in Populus and the plant kingdom

por Pettengill, Emily A, Pettengill, James B, Coleman, Gary D
Publicado 2013

Within-species contamination of bacterial whole-genome sequence data has a greater influence on clustering analyses than between-species contamination

por Pightling, Arthur W., Pettengill, James B., Wang, Yu, Rand, Hugh, Strain, Errol
Publicado 2019

Real-Time Pathogen Detection in the Era of Whole-Genome Sequencing and Big Data: Comparison of k-mer and Site-Based Methods for Inferring the Genetic Distances among Tens of Thousa...

por Pettengill, James B., Pightling, Arthur W., Baugher, Joseph D., Rand, Hugh, Strain, Errol
Publicado 2016

Transient and resident pathogens: Intra-facility genetic diversity of Listeria monocytogenes and Salmonella from food production environments

por Pettengill, James B., Rand, Hugh, Wang, Shizhen S., Kautter, Donald, Pightling, Arthur, Wang, Yu
Publicado 2022

The impact of systemic and copper pesticide applications on the phyllosphere microflora of tomatoes

por Ottesen, Andrea R, Gorham, Sasha, Pettengill, James B, Rideout, Steven, Evans, Peter, Brown, Eric
Publicado 2015

Genomic analysis of Listeria monocytogenes from US food processing environments reveals a high prevalence of QAC efflux genes but limited evidence of their contribution to environm...

por Daeschel, Devin, Pettengill, James B., Wang, Yu, Chen, Yi, Allard, Marc, Snyder, Abigail B.
Publicado 2022

Performance of methods for SARS-CoV-2 variant detection and abundance estimation within mixed population samples

por Kayikcioglu, Tunc, Amirzadegan, Jasmine, Rand, Hugh, Tesfaldet, Bereket, Timme, Ruth E., Pettengill, James B.
Publicado 2023

Using metagenomic analyses to estimate the consequences of enrichment bias for pathogen detection

por Pettengill, James B, McAvoy, Eugene, White, James R, Allard, Marc, Brown, Eric, Ottesen, Andrea
Publicado 2012

Interpreting Whole-Genome Sequence Analyses of Foodborne Bacteria for Regulatory Applications and Outbreak Investigations

por Pightling, Arthur W., Pettengill, James B., Luo, Yan, Baugher, Joseph D., Rand, Hugh, Strain, Errol
Publicado 2018

Temporal Dynamics of Salmonella enterica subsp. enterica Serovar Agona Isolates From a Recurrent Multistate Outbreak

por Hoffmann, Maria, Miller, John, Melka, David, Allard, Marc W., Brown, Eric W., Pettengill, James B.
Publicado 2020

Evaluation of Virulence Determinants Using Whole-Genome Sequencing and Phenotypic Biofilm Analysis of Outbreak-Linked Staphylococcus aureus Isolates

por Hait, Jennifer M., Cao, Guojie, Kastanis, George, Yin, Lanlan, Pettengill, James B., Tallent, Sandra M.
Publicado 2021

Complete Genome Sequence of Salmonella enterica subsp. enterica Serovar Agona 460004 2-1, Associated with a Multistate Outbreak in the United States

por Hoffmann, Maria, Payne, Justin, Roberts, Richard J., Allard, Marc W., Brown, Eric W., Pettengill, James B.
Publicado 2015

The evolutionary history and diagnostic utility of the CRISPR-Cas system within Salmonella enterica ssp. enterica

por Pettengill, James B., Timme, Ruth E., Barrangou, Rodolphe, Toro, Magaly, Allard, Marc W., Strain, Errol, Musser, Steven M., Brown, Eric W.
Publicado 2014

An evaluation of alternative methods for constructing phylogenies from whole genome sequence data: a case study with Salmonella

por Pettengill, James B., Luo, Yan, Davis, Steven, Chen, Yi, Gonzalez-Escalona, Narjol, Ottesen, Andrea, Rand, Hugh, Allard, Marc W., Strain, Errol
Publicado 2014

Assessment of plasmids for relating the 2020 Salmonella enterica serovar Newport onion outbreak to farms implicated by the outbreak investigation

por Commichaux, Seth, Rand, Hugh, Javkar, Kiran, Molloy, Erin K., Pettengill, James B., Pightling, Arthur, Hoffmann, Maria, Pop, Mihai, Jayeola, Victor, Foley, Steven, Luo, Yan
Publicado 2023