Impact of Aligner, Normalization Method, and Sequencing Depth on TempO-seq Accuracy

por Everett, Logan J, Mav, Deepak, Phadke, Dhiral P, Balik-Meisner, Michele R, Shah, Ruchir R
Publicado 2022

RNA-Seq Profiling Reveals Novel Hepatic Gene Expression Pattern in Aflatoxin B1 Treated Rats

por Merrick, B. Alex, Phadke, Dhiral P., Auerbach, Scott S., Mav, Deepak, Stiegelmeyer, Suzy M., Shah, Ruchir R., Tice, Raymond R.
Publicado 2013

HAfTs are novel lncRNA transcripts from aflatoxin exposure

por Merrick, B. Alex, Chang, Justin S., Phadke, Dhiral P., Bostrom, Meredith A., Shah, Ruchir R., Wang, Xinguo, Gordon, Oksana, Wright, Garron M.
Publicado 2018

Development of a Zebrafish S1500+ Sentinel Gene Set for High-Throughput Transcriptomics

por Balik-Meisner, Michele R., Mav, Deepak, Phadke, Dhiral P., Everett, Logan J., Shah, Ruchir R., Tal, Tamara, Shepard, Peter J., Merrick, B. Alex, Paules, Richard S.
Publicado 2019

Transcriptional pathways linked to fetal and maternal hepatic dysfunction caused by gestational exposure to perfluorooctanoic acid (PFOA) or hexafluoropropylene oxide-dimer acid (H...

por Blake, Bevin E., Miller, Colette N., Nguyen, Helen, Chappell, Vesna A., Phan, Trina P., Phadke, Dhiral P., Balik-Meisner, Michele R., Mav, Deepak, Shah, Ruchir R., Fenton, Suzanne E.
Publicado 2022

Whole genome sequencing of low input circulating cell‐free DNA obtained from normal human subjects

por Foley, Julie F., Elgart, Brian, Alex Merrick, B., Phadke, Dhiral P., Cook, Molly E., Malphurs, Jason A., Solomon, Gregory G., Shah, Ruchir R., Fessler, Michael B., Miller, Frederick W., Gerrish, Kevin E.
Publicado 2021

Utility of Extrapolating Human S1500+ Genes to the Whole Transcriptome: Tunicamycin Case Study

por Mav, Deepak, Phadke, Dhiral P, Balik-Meisner, Michele R, Merrick, B Alex, Auerbach, Scott, Niemeijer, Marije, Huppelschoten, Suzanna, Baze, Audrey, Parmentier, Celine, Richert, Lysiane, van de Water, Bob, Shah, Ruchir R, Paules, Richard S
Publicado 2020

Arsenite malignantly transforms human prostate epithelial cells in vitro by gene amplification of mutated KRAS

por Merrick, B. Alex, Phadke, Dhiral P., Bostrom, Meredith A., Shah, Ruchir R., Wright, Garron M., Wang, Xinguo, Gordon, Oksana, Pelch, Katherine E., Auerbach, Scott S., Paules, Richard S., DeVito, Michael J., Waalkes, Michael P., Tokar, Erik J.
Publicado 2019

Whole exome sequencing in the rat

por Foley, Julie F., Phadke, Dhiral P., Hardy, Owen, Hardy, Sara, Miller, Victor, Madan, Anup, Howard, Kellie, Kruse, Kimberly, Lord, Cara, Ramaiahgari, Sreenivasa, Solomon, Gregory G., Shah, Ruchir R., Pandiri, Arun R., Herbert, Ronald A., Sills, Robert C., Merrick, B. Alex
Publicado 2018