dotdotdot: an automated approach to quantify multiplex single molecule fluorescent in situ hybridization (smFISH) images in complex tissues

por Maynard, Kristen R, Tippani, Madhavi, Takahashi, Yoichiro, Phan, BaDoi N, Hyde, Thomas M, Jaffe, Andrew E, Martinowich, Keri
Publicado 2020

Olfactory and neurological outcomes of SARS-CoV-2 from acute infection to recovery

por Desai, Deesha D., Yu, Sophie E., Salvatore, Brock, Goldberg, Zoe, Bowers, Eve M. R., Moore, John A., Phan, BaDoi, Lee, Stella E.
Publicado 2022

Addiction-Associated Genetic Variants Implicate Brain Cell Type- and Region-Specific Cis-Regulatory Elements in Addiction Neurobiology

por Srinivasan, Chaitanya, Phan, BaDoi N., Lawler, Alyssa J., Ramamurthy, Easwaran, Kleyman, Michael, Brown, Ashley R., Kaplow, Irene M., Wirthlin, Morgan E., Pfenning, Andreas R.
Publicado 2021

BDNF-TrkB signaling in oxytocin neurons contributes to maternal behavior

por Maynard, Kristen R, Hobbs, John W, Phan, BaDoi N, Gupta, Amolika, Rajpurohit, Sumita, Williams, Courtney, Rajpurohit, Anandita, Shin, Joo Heon, Jaffe, Andrew E, Martinowich, Keri
Publicado 2018

Integrative multi-dimensional characterization of striatal projection neuron heterogeneity in adult brain

por Gayden, Jenesis, Puig, Stephanie, Srinivasan, Chaitanya, Phan, BaDoi N., Abdelhady, Ghada, Buck, Silas A., Gamble, Mackenzie C., Tejeda, Hugo A., Dong, Yan, Pfenning, Andreas R., Logan, Ryan W., Freyberg, Zachary
Publicado 2023

The schizophrenia and autism associated gene, Transcription Factor 4 (TCF4) regulates the columnar distribution of layer 2/3 prefrontal pyramidal neurons in an activity-dependent m...

por Page, Stephanie Cerceo, Hamersky, Gregory R., Gallo, Ryan A., Rannals, Matthew D., Calcaterra, Nicolas E., Campbell, Morganne N., Mayfield, Brent, Briley, Aaron, Phan, BaDoi N., Jaffe, Andrew E., Maher, Brady J.
Publicado 2017

Molecular rhythm alterations in prefrontal cortex and nucleus accumbens associated with opioid use disorder

por Xue, Xiangning, Zong, Wei, Glausier, Jill R., Kim, Sam-Moon, Shelton, Micah A., Phan, BaDoi N., Srinivasan, Chaitanya, Pfenning, Andreas R., Tseng, George C., Lewis, David A., Seney, Marianne L., Logan, Ryan W.
Publicado 2022

SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor-powered RNA-seq analyses

por Eagles, Nicholas J., Burke, Emily E., Leonard, Jacob, Barry, Brianna K., Stolz, Joshua M., Huuki, Louise, Phan, BaDoi N., Serrato, Violeta Larios, Gutiérrez-Millán, Everardo, Aguilar-Ordoñez, Israel, Jaffe, Andrew E., Collado-Torres, Leonardo
Publicado 2021

Correction to: SPEAQeasy: a scalable pipeline for expression analysis and quantification for R/bioconductor‑powered RNA‑seq analyses

por Eagles, Nicholas J., Burke, Emily E., Leonard, Jacob, Barry, Brianna K., Stolz, Joshua M., Huuki, Louise, Phan, BaDoi N., Serrato, Violeta Larios, Gutiérrez-Millán, Everardo, Aguilar-Ordoñez, Israel, Jaffe, Andrew E., Collado-Torres, Leonardo
Publicado 2021

Machine learning sequence prioritization for cell type-specific enhancer design

por Lawler, Alyssa J, Ramamurthy, Easwaran, Brown, Ashley R, Shin, Naomi, Kim, Yeonju, Toong, Noelle, Kaplow, Irene M, Wirthlin, Morgan, Zhang, Xiaoyu, Phan, BaDoi N, Fox, Grant A, Wade, Kirsten, He, Jing, Ozturk, Bilge Esin, Byrne, Leah C, Stauffer, William R, Fish, Kenneth N, Pfenning, Andreas R
Publicado 2022

A myelin-related transcriptomic profile is shared between Pitt Hopkins syndrome models and human autism spectrum disorder

por Phan, BaDoi N., Bohlen, Joseph F., Davis, Brittany A., Ye, Zengyou, Chen, Huei-Ying, Mayfield, Brent, Sripathy, Srinidhi Rao, Page, Stephanie Cerceo, Campbell, Morganne N., Smith, Hannah L., Gallop, Danisha, Kim, Hyojin, Thaxton, Courtney L., Simon, Jeremy M., Burke, Emily E., Shin, Joo Heon, Kennedy, Andrew J., Sweatt, J. David, Philpot, Benjamin D., Jaffe, Andrew E., Maher, Brady J.
Publicado 2020

Leveraging Base Pair Mammalian Constraint to Understand Genetic Variation and Human Disease

por Sullivan, Patrick F., Meadows, Jennifer R. S., Gazal, Steven, Phan, BaDoi N., Li, Xue, Genereux, Diane P., Dong, Michael X., Bianchi, Matteo, Andrews, Gregory, Sakthikumar, Sharadha, Nordin, Jessika, Roy, Ananya, Christmas, Matthew J., Marinescu, Voichita D., Wallerman, Ola, Xue, James R., Li, Yun, Yao, Shuyang, Sun, Quan, Szatkiewicz, Jin, Wen, Jia, Huckins, Laura M., Lawler, Alyssa J., Keough, Kathleen C., Zheng, Zhili, Zeng, Jian, Wray, Naomi R., Johnson, Jessica, Chen, Jiawen, Paten, Benedict, Reilly, Steven K., Hughes, Graham M., Weng, Zhiping, Pollard, Katherine S., Pfenning, Andreas R., Forsberg-Nilsson, Karin, Karlsson, Elinor K., Lindblad-Toh, Kerstin
Publicado 2023

Dissecting transcriptomic signatures of neuronal differentiation and maturation using iPSCs

por Burke, Emily E., Chenoweth, Joshua G., Shin, Joo Heon, Collado-Torres, Leonardo, Kim, Suel-Kee, Micali, Nicola, Wang, Yanhong, Colantuoni, Carlo, Straub, Richard E., Hoeppner, Daniel J., Chen, Huei-Ying, Sellers, Alana, Shibbani, Kamel, Hamersky, Gregory R., Diaz Bustamante, Marcelo, Phan, BaDoi N., Ulrich, William S., Valencia, Cristian, Jaishankar, Amritha, Price, Amanda J., Rajpurohit, Anandita, Semick, Stephen A., Bürli, Roland W., Barrow, James C., Hiler, Daniel J., Page, Stephanie C., Martinowich, Keri, Hyde, Thomas M., Kleinman, Joel E., Berman, Karen F., Apud, Jose A., Cross, Alan J., Brandon, Nicholas J., Weinberger, Daniel R., Maher, Brady J., McKay, Ronald D. G., Jaffe, Andrew E.
Publicado 2020