New advances in sequence assembly

por Phillippy, Adam M.
Publicado 2017

Irreconcilable differences: divorcing geographic mutation and recombination rates within a global MRSA clone

por Treangen, Todd J, Phillippy, Adam M
Publicado 2012

The rise of a digital immune system

por Schatz, Michael C, Phillippy, Adam M
Publicado 2012

Genome assembly forensics: finding the elusive mis-assembly

por Phillippy, Adam M, Schatz, Michael C, Pop, Mihai
Publicado 2008

Interactive metagenomic visualization in a Web browser

por Ondov, Brian D, Bergman, Nicholas H, Phillippy, Adam M
Publicado 2011

Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps

por Dilthey, Alexander T., Jain, Chirag, Koren, Sergey, Phillippy, Adam M.
Publicado 2019

Minmers are a generalization of minimizers that enable unbiased local Jaccard estimation

por Kille, Bryce, Garrison, Erik, Treangen, Todd J, Phillippy, Adam M
Publicado 2023

Efficient oligonucleotide probe selection for pan-genomic tiling arrays

por Phillippy, Adam M, Deng, Xiangyu, Zhang, Wei, Salzberg, Steven L
Publicado 2009

Merqury: reference-free quality, completeness, and phasing assessment for genome assemblies

por Rhie, Arang, Walenz, Brian P., Koren, Sergey, Phillippy, Adam M.
Publicado 2020

Hawkeye: an interactive visual analytics tool for genome assemblies

por Schatz, Michael C, Phillippy, Adam M, Shneiderman, Ben, Salzberg, Steven L
Publicado 2007

Insignia: a DNA signature search web server for diagnostic assay development

por Phillippy, Adam M., Ayanbule, Kunmi, Edwards, Nathan J., Salzberg, Steven L.
Publicado 2009

The Harvest suite for rapid core-genome alignment and visualization of thousands of intraspecific microbial genomes

por Treangen, Todd J, Ondov, Brian D, Koren, Sergey, Phillippy, Adam M
Publicado 2014

A fast adaptive algorithm for computing whole-genome homology maps

por Jain, Chirag, Koren, Sergey, Dilthey, Alexander, Phillippy, Adam M, Aluru, Srinivas
Publicado 2018

RefSeq database growth influences the accuracy of k-mer-based lowest common ancestor species identification

por Nasko, Daniel J., Koren, Sergey, Phillippy, Adam M., Treangen, Todd J.
Publicado 2018

Probing the pan-genome of Listeria monocytogenes: new insights into intraspecific niche expansion and genomic diversification

por Deng, Xiangyu, Phillippy, Adam M, Li, Zengxin, Salzberg, Steven L, Zhang, Wei
Publicado 2010

Efficient High-Quality Metagenome Assembly from Long Accurate Reads using Minimizer-space de Bruijn Graphs

por Benoit, Gaëtan, Raguideau, Sébastien, James, Robert, Phillippy, Adam M., Chikhi, Rayan, Quince, Christopher
Publicado 2023

Automated ensemble assembly and validation of microbial genomes

por Koren, Sergey, Treangen, Todd J, Hill, Christopher M, Pop, Mihai, Phillippy, Adam M
Publicado 2014

High throughput ANI analysis of 90K prokaryotic genomes reveals clear species boundaries

por Jain, Chirag, Rodriguez-R, Luis M., Phillippy, Adam M., Konstantinidis, Konstantinos T., Aluru, Srinivas
Publicado 2018

Identification and Genomic Analysis of a Novel Group C Orthobunyavirus Isolated from a Mosquito Captured near Iquitos, Peru

por Treangen, Todd J., Schoeler, George, Phillippy, Adam M., Bergman, Nicholas H., Turell, Michael J.
Publicado 2016

MUMmer4: A fast and versatile genome alignment system

por Marçais, Guillaume, Delcher, Arthur L., Phillippy, Adam M., Coston, Rachel, Salzberg, Steven L., Zimin, Aleksey
Publicado 2018