A cloud-based workflow to quantify transcript-expression levels in public cancer compendia

por Tatlow, PJ, Piccolo, Stephen R.
Publicado 2016

Tools and techniques for computational reproducibility

por Piccolo, Stephen R., Frampton, Michael B.
Publicado 2016

Classifying cancer genome aberrations by their mutually exclusive effects on transcription

por Dayton, Jonathan B., Piccolo, Stephen R.
Publicado 2017

Compound Heterozygous Variants in Pediatric Cancers: A Systematic Review

por Miller, Dustin B., Piccolo, Stephen R.
Publicado 2020

CompoundHetVIP: Compound Heterozygous Variant Identification Pipeline

por Miller, Dustin B., Piccolo, Stephen R.
Publicado 2021

A Survey of Compound Heterozygous Variants in Pediatric Cancers and Structural Birth Defects

por Miller, Dustin B., Piccolo, Stephen R.
Publicado 2021

trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios

por Miller, Dustin B., Piccolo, Stephen R.
Publicado 2021

Toward a methodology for evaluating DNA variants in nuclear families

por Miller, Dustin B., Robison, Reid, Piccolo, Stephen R.
Publicado 2021

Multiplicity: an organizing principle for cancers and somatic mutations

por Frey, Lewis J, Piccolo, Stephen R, Edgerton, Mary E
Publicado 2011

The DNA methylation landscape of five pediatric-tumor types

por Parker, Alyssa C., Quinteros, Badí I., Piccolo, Stephen R.
Publicado 2022

ShinyLearner: A containerized benchmarking tool for machine-learning classification of tabular data

por Piccolo, Stephen R, Lee, Terry J, Suh, Erica, Hill, Kimball
Publicado 2020

A Field Guide to Genomics Research

por Bild, Andrea H., Chang, Jeffrey T., Johnson, W. Evan, Piccolo, Stephen R.
Publicado 2014

Predicting drug sensitivity of cancer cells based on DNA methylation levels

por Miranda, Sofia P., Baião, Fernanda A., Fleck, Julia L., Piccolo, Stephen R.
Publicado 2021

Evaluating a large language model’s ability to solve programming exercises from an introductory bioinformatics course

por Piccolo, Stephen R., Denny, Paul, Luxton-Reilly, Andrew, Payne, Samuel H., Ridge, Perry G.
Publicado 2023

Curated compendium of human transcriptional biomarker data

por Golightly, Nathan P., Bell, Avery, Bischoff, Anna I., Hollingsworth, Parker D., Piccolo, Stephen R.
Publicado 2018

Remote sensing tree classification with a multilayer perceptron

por Sumsion, G Rex, Bradshaw, Michael S., Hill, Kimball T., Pinto, Lucas D.G., Piccolo, Stephen R.
Publicado 2019

Simplifying the development of portable, scalable, and reproducible workflows

por Piccolo, Stephen R, Ence, Zachary E, Anderson, Elizabeth C, Chang, Jeffrey T, Bild, Andrea H
Publicado 2021

The ability to classify patients based on gene-expression data varies by algorithm and performance metric

por Piccolo, Stephen R., Mecham, Avery, Golightly, Nathan P., Johnson, Jérémie L., Miller, Dustin B.
Publicado 2022

Inferring pathway dysregulation in cancers from multiple types of omic data

por MacNeil, Shelley M, Johnson, William E, Li, Dean Y, Piccolo, Stephen R, Bild, Andrea H
Publicado 2015

Metastatic colon adenocarcinoma has a significantly elevated expression of IL-10 compared with primary colon adenocarcinoma tumors

por Townsend, Michelle H., Felsted, Abigail M., Piccolo, Stephen R., Robison, Richard A., O'Neill, Kim L.
Publicado 2018