BloodChIP: a database of comparative genome-wide transcription factor binding profiles in human blood cells

por Chacon, Diego, Beck, Dominik, Perera, Dilmi, Wong, Jason W. H., Pimanda, John E.
Publicado 2014

Analysing high-throughput sequencing data in Python with HTSeq 2.0

por Putri, Givanna H, Anders, Simon, Pyl, Paul Theodor, Pimanda, John E, Zanini, Fabio
Publicado 2022

Endoglin potentiates nitric oxide synthesis to enhance definitive hematopoiesis

por Nasrallah, Rabab, Knezevic, Kathy, Thai, Thuan, Thomas, Shane R., Göttgens, Berthold, Lacaud, Georges, Kouskoff, Valerie, Pimanda, John E.
Publicado 2015

Reassembly of Nucleosomes at the MLH1 Promoter Initiates Resilencing Following Decitabine Exposure

por Hesson, Luke B., Patil, Vibha, Sloane, Mathew A., Nunez, Andrea C., Liu, Jia, Pimanda, John E., Ward, Robyn L.
Publicado 2013

OncoCis: annotation of cis-regulatory mutations in cancer

por Perera, Dilmi, Chacon, Diego, Thoms, Julie AI, Poulos, Rebecca C, Shlien, Adam, Beck, Dominik, Campbell, Peter J, Pimanda, John E, Wong, Jason WH
Publicado 2014

Scarcity of Recurrent Regulatory Driver Mutations in Colorectal Cancer Revealed by Targeted Deep Sequencing

por Poulos, Rebecca C, Perera, Dilmi, Packham, Deborah, Shah, Anushi, Janitz, Caroline, Pimanda, John E, Hawkins, Nicholas, Ward, Robyn L, Hesson, Luke B, Wong, Jason W H
Publicado 2019

Defined Microenvironments Trigger In Vitro Gastrulation in Human Pluripotent Stem Cells

por Srivastava, Pallavi, Romanazzo, Sara, Kopecky, Chantal, Nemec, Stephanie, Ireland, Jake, Molley, Thomas G., Lin, Kang, Jayathilaka, Pavithra B., Pandzic, Elvis, Yeola, Avani, Chandrakanthan, Vashe, Pimanda, John, Kilian, Kristopher
Publicado 2022

p57Kip2 regulates embryonic blood stem cells by controlling sympathoadrenal progenitor expansion

por Kapeni, Chrysa, Nitsche, Leslie, Kilpatrick, Alastair M., Wilson, Nicola K., Xia, Kankan, Mirshekar-Syahkal, Bahar, Chandrakanthan, Vashe, Malouf, Camille, Pimanda, John E., Göttgens, Berthold, Kirschner, Kristina, Tomlinson, Simon R., Ottersbach, Katrin
Publicado 2022

CIP2A is a candidate therapeutic target in clinically challenging prostate cancer cell populations

por Khanna, Anchit, Rane, Jayant K., Kivinummi, Kati K., Urbanucci, Alfonso, Helenius, Merja A., Tolonen, Teemu T., Saramäki, Outi R., Latonen, Leena, Manni, Visa, Pimanda, John E., Maitland, Norman J., Westermarck, Jukka, Visakorpi, Tapio
Publicado 2015

Neoantigen reactive T cells correlate with the low mutational burden in hematological malignancies

por Saini, Sunil Kumar, Holmberg-Thydén, Staffan, Bjerregaard, Anne-Mette, Unnikrishnan, Ashwin, Dorfmüller, Simon, Platzbecker, Uwe, Tirado-Gonzalez, Irene, Bönig, Halvard, El Fassi, Daniel, Grønbæk, Kirsten, Pimanda, John, Medyouf, Hind, Hadrup, Sine Reker
Publicado 2022

Acute myeloid leukemia requires Hhex to enable PRC2-mediated epigenetic repression of Cdkn2a

por Shields, Benjamin J., Jackson, Jacob T., Metcalf, Donald, Shi, Wei, Huang, Qiutong, Garnham, Alexandra L., Glaser, Stefan P., Beck, Dominik, Pimanda, John E., Bogue, Clifford W., Smyth, Gordon K., Alexander, Warren S., McCormack, Matthew P.
Publicado 2016

DKC1 is a transcriptional target of GATA1 and drives upregulation of telomerase activity in normal human erythroblasts

por Richards, Laura A., Kumari, Ashu, Knezevic, Kathy, Thoms, Julie AI, von Jonquieres, Georg, Napier, Christine E., Ali, Zara, O’Brien, Rosemary, Marks-Bluth, Jonathon, Maritz, Michelle F., Pickett, Hilda A, Morris, Jonathan, Pimanda, John E., MacKenzie, Karen L.
Publicado 2020

A novel mouse model identifies cooperating mutations and therapeutic targets critical for chronic myeloid leukemia progression

por Giotopoulos, George, van der Weyden, Louise, Osaki, Hikari, Rust, Alistair G., Gallipoli, Paolo, Meduri, Eshwar, Horton, Sarah J., Chan, Wai-In, Foster, Donna, Prinjha, Rab K., Pimanda, John E., Tenen, Daniel G., Vassiliou, George S., Koschmieder, Steffen, Adams, David J., Huntly, Brian J.P.
Publicado 2015

Whole-transcriptome analysis of endothelial to hematopoietic stem cell transition reveals a requirement for Gpr56 in HSC generation

por Solaimani Kartalaei, Parham, Yamada-Inagawa, Tomoko, Vink, Chris S., de Pater, Emma, van der Linden, Reinier, Marks-Bluth, Jonathon, van der Sloot, Anthon, van den Hout, Mirjam, Yokomizo, Tomomasa, van Schaick-Solernó, M. Lucila, Delwel, Ruud, Pimanda, John E., van IJcken, Wilfred F.J., Dzierzak, Elaine
Publicado 2015

A quantitative proteomics approach identifies ETV6 and IKZF1 as new regulators of an ERG-driven transcriptional network

por Unnikrishnan, Ashwin, Guan, Yi F., Huang, Yizhou, Beck, Dominik, Thoms, Julie A. I., Peirs, Sofie, Knezevic, Kathy, Ma, Shiyong, de Walle, Inge V., de Jong, Ineke, Ali, Zara, Zhong, Ling, Raftery, Mark J., Taghon, Tom, Larsson, Jonas, MacKenzie, Karen L., Van Vlierberghe, Pieter, Wong, Jason W. H., Pimanda, John E.
Publicado 2016

The non-coding RNA landscape of human hematopoiesis and leukemia

por Schwarzer, Adrian, Emmrich, Stephan, Schmidt, Franziska, Beck, Dominik, Ng, Michelle, Reimer, Christina, Adams, Felix Ferdinand, Grasedieck, Sarah, Witte, Damian, Käbler, Sebastian, Wong, Jason W. H., Shah, Anushi, Huang, Yizhou, Jammal, Razan, Maroz, Aliaksandra, Jongen-Lavrencic, Mojca, Schambach, Axel, Kuchenbauer, Florian, Pimanda, John E., Reinhardt, Dirk, Heckl, Dirk, Klusmann, Jan-Henning
Publicado 2017

Murine and related chapparvoviruses are nephro-tropic and produce novel accessory proteins in infected kidneys

por Lee, Quintin, Padula, Matthew P., Pinello, Natalia, Williams, Simon H., O'Rourke, Matthew B., Fumagalli, Marcilio Jorge, Orkin, Joseph D., Song, Renhua, Shaban, Babak, Brenner, Ori, Pimanda, John E., Weninger, Wolfgang, de Souza, William Marciel, Melin, Amanda D., Wong, Justin J.-L., Crim, Marcus J., Monette, Sébastien, Roediger, Ben, Jolly, Christopher J.
Publicado 2020

Mesoderm-derived PDGFRA(+) cells regulate the emergence of hematopoietic stem cells in the dorsal aorta

por Chandrakanthan, Vashe, Rorimpandey, Prunella, Zanini, Fabio, Chacon, Diego, Olivier, Jake, Joshi, Swapna, Kang, Young Chan, Knezevic, Kathy, Huang, Yizhou, Qiao, Qiao, Oliver, Rema A., Unnikrishnan, Ashwin, Carter, Daniel R., Lee, Brendan, Brownlee, Chris, Power, Carl, Brink, Robert, Mendez-Ferrer, Simon, Enikolopov, Grigori, Walsh, William, Göttgens, Berthold, Taoudi, Samir, Beck, Dominik, Pimanda, John E.
Publicado 2022

Human endogenous retroviruses form a reservoir of T cell targets in hematological cancers

por Saini, Sunil Kumar, Ørskov, Andreas Due, Bjerregaard, Anne-Mette, Unnikrishnan, Ashwin, Holmberg-Thydén, Staffan, Borch, Annie, Jensen, Kathrine Valentini, Anande, Govardhan, Bentzen, Amalie Kai, Marquard, Andrea Marion, Tamhane, Tripti, Treppendahl, Marianne Bach, Gang, Anne Ortved, Dufva, Inge Høgh, Szallasi, Zoltan, Ternette, Nicola, Pedersen, Anders Gorm, Eklund, Aron Charles, Pimanda, John, Grønbæk, Kirsten, Hadrup, Sine Reker
Publicado 2020

The NCOR-HDAC3 co-repressive complex modulates the leukemogenic potential of the transcription factor ERG

por Kugler, Eitan, Madiwale, Shreyas, Yong, Darren, Thoms, Julie A. I., Birger, Yehudit, Sykes, David B., Schmoellerl, Johannes, Drakul, Aneta, Priebe, Valdemar, Yassin, Muhammad, Aqaqe, Nasma, Rein, Avigail, Fishman, Hila, Geron, Ifat, Chen, Chun-Wei, Raught, Brian, Liu, Qiao, Ogana, Heather, Liedke, Elisabeth, Bourquin, Jean-Pierre, Zuber, Johannes, Milyavsky, Michael, Pimanda, John, Privé, Gilbert G., Izraeli, Shai
Publicado 2023