A methodology to assess the intrinsic discriminative ability of a distance function and its interplay with clustering algorithms for microarray data analysis

por Giancarlo, Raffaele, Lo Bosco, Giosué, Pinello, Luca, Utro, Filippo
Publicado 2013

Predicting chromatin organization using histone marks

por Huang, Jialiang, Marco, Eugenio, Pinello, Luca, Yuan, Guo-Cheng
Publicado 2015

GiniClust: detecting rare cell types from single-cell gene expression data with Gini index

por Jiang, Lan, Chen, Huidong, Pinello, Luca, Yuan, Guo-Cheng
Publicado 2016

AmpUMI: design and analysis of unique molecular identifiers for deep amplicon sequencing

por Clement, Kendell, Farouni, Rick, Bauer, Daniel E, Pinello, Luca
Publicado 2018

A motif-independent metric for DNA sequence specificity

por Pinello, Luca, Lo Bosco, Giosuè, Hanlon, Bret, Yuan, Guo-Cheng
Publicado 2011

GRAFIMO: Variant and haplotype aware motif scanning on pangenome graphs

por Tognon, Manuel, Bonnici, Vincenzo, Garrison, Erik, Giugno, Rosalba, Pinello, Luca
Publicado 2021

Functionally distinct patterns of nucleosome remodeling at enhancers in glucocorticoid-treated acute lymphoblastic leukemia

por Wu, Jennifer N., Pinello, Luca, Yissachar, Elinor, Wischhusen, Jonathan W., Yuan, Guo-Cheng, Roberts, Charles W. M.
Publicado 2015

Multi-scale chromatin state annotation using a hierarchical hidden Markov model

por Marco, Eugenio, Meuleman, Wouter, Huang, Jialiang, Glass, Kimberly, Pinello, Luca, Wang, Jianrong, Kellis, Manolis, Yuan, Guo-Cheng
Publicado 2017

singlecellVR: Interactive Visualization of Single-Cell Data in Virtual Reality

por Stein, David F., Chen, Huidong, Vinyard, Michael E., Qin, Qian, Combs, Rebecca D., Zhang, Qian, Pinello, Luca
Publicado 2021

Gene regulatory pattern analysis reveals essential role of core transcriptional factors’ activation in triple-negative breast cancer

por Min, Li, Zhang, Cheng, Qu, Like, Huang, Jialiang, Jiang, Lan, Liu, Jiafei, Pinello, Luca, Yuan, Guo-Cheng, Shou, Chengchao
Publicado 2017

An APOBEC3A-Cas9 base editor with minimized bystander and off-target activities

por Gehrke, Jason M., Cervantes, Oliver, Clement, M. Kendell, Wu, Yuxuan, Zeng, Jing, Bauer, Daniel E., Pinello, Luca, Joung, J. Keith
Publicado 2018

Robust and Scalable Learning of Complex Intrinsic Dataset Geometry via ElPiGraph

por Albergante, Luca, Mirkes, Evgeny, Bac, Jonathan, Chen, Huidong, Martin, Alexis, Faure, Louis, Barillot, Emmanuel, Pinello, Luca, Gorban, Alexander, Zinovyev, Andrei
Publicado 2020

LSD1 suppresses invasion, migration and metastasis of luminal breast cancer cells via activation of GATA3 and repression of TRIM37 expression

por Hu, Xin, Xiang, Dongxi, Xie, Ying, Tao, Luwei, Zhang, Yu, Jin, Yue, Pinello, Luca, Wan, Youzhong, Yuan, Guo-Cheng, Li, Zhe
Publicado 2019

Parallel Single-Cell RNA-Seq and Genetic Recording Reveals Lineage Decisions in Developing Embryoid Bodies

por Kim, Ik Soo, Wu, Jingyi, Rahme, Gilbert J., Battaglia, Sofia, Dixit, Atray, Gaskell, Elizabeth, Chen, Huidong, Pinello, Luca, Bernstein, Bradley E.
Publicado 2020

Integrative dissection of gene regulatory elements at base resolution

por Chen, Zeyu, Javed, Nauman, Moore, Molly, Wu, Jingyi, Sun, Gary, Vinyard, Michael, Collins, Alejandro, Pinello, Luca, Najm, Fadi J., Bernstein, Bradley E.
Publicado 2023

Assessment of computational methods for the analysis of single-cell ATAC-seq data

por Chen, Huidong, Lareau, Caleb, Andreani, Tommaso, Vinyard, Michael E., Garcia, Sara P., Clement, Kendell, Andrade-Navarro, Miguel A., Buenrostro, Jason D., Pinello, Luca
Publicado 2019

Augmenting and directing long-range CRISPR-mediated activation in human cells

por Tak, Y. Esther, Horng, Joy E., Perry, Nicholas T., Schultz, Hayley T., Iyer, Sowmya, Yao, Qiuming, Zou, Luli S., Aryee, Martin J., Pinello, Luca, Joung, J. Keith
Publicado 2021

Transcription factor competition at the γ-globin promoters controls hemoglobin switching

por Liu, Nan, Xu, Shuqian, Yao, Qiuming, Zhu, Qian, Kai, Yan, Hsu, Jonathan Y., Sakon, Phraew, Pinello, Luca, Yuan, Guo-Cheng, Bauer, Daniel E., Orkin, Stuart H.
Publicado 2021

The cohesin-associated protein Wapal is required for proper Polycomb-mediated gene silencing

por Stelloh, Cary, Reimer, Michael H., Pulakanti, Kirthi, Blinka, Steven, Peterson, Jonathan, Pinello, Luca, Jia, Shuang, Roumiantsev, Sergei, Hessner, Martin J., Milanovich, Samuel, Yuan, Guo-Cheng, Rao, Sridhar
Publicado 2016

CRISPRO: identification of functional protein coding sequences based on genome editing dense mutagenesis

por Schoonenberg, Vivien A. C., Cole, Mitchel A., Yao, Qiuming, Macias-Treviño, Claudio, Sher, Falak, Schupp, Patrick G., Canver, Matthew C., Maeda, Takahiro, Pinello, Luca, Bauer, Daniel E.
Publicado 2018