A computational approach to identify transposable element insertions in cancer cells

por Silva, Israel T, Pinheiro, Daniel G, Silva, Wilson A
Publicado 2011

A score system for quality evaluation of RNA sequence tags: an improvement for gene expression profiling

por Pinheiro, Daniel G, Galante, Pedro AF, de Souza, Sandro J, Zago, Marco A, Silva, Wilson A
Publicado 2009

Comparative genomic analysis of Genlisea (corkscrew plants—Lentibulariaceae) chloroplast genomes reveals an increasing loss of the ndh genes

por Silva, Saura R., Michael, Todd P., Meer, Elliott J., Pinheiro, Daniel G., Varani, Alessandro M., Miranda, Vitor F. O.
Publicado 2018

Intraspecific Variation within the Utricularia amethystina Species Morphotypes Based on Chloroplast Genomes

por Silva, Saura R., Pinheiro, Daniel G., Penha, Helen A., Płachno, Bartosz J., Michael, Todd P., Meer, Elliott J., Miranda, Vitor F. O., Varani, Alessandro M.
Publicado 2019

The Chloroplast Genome of Utricularia reniformis Sheds Light on the Evolution of the ndh Gene Complex of Terrestrial Carnivorous Plants from the Lentibulariaceae Family

por Silva, Saura R., Diaz, Yani C. A., Penha, Helen Alves, Pinheiro, Daniel G., Fernandes, Camila C., Miranda, Vitor F. O., Michael, Todd P., Varani, Alessandro M.
Publicado 2016

Developmental regulation of ecdysone receptor (EcR) and EcR-controlled gene expression during pharate-adult development of honeybees (Apis mellifera)

por Mello, Tathyana R. P., Aleixo, Aline C., Pinheiro, Daniel G., Nunes, Francis M. F., Bitondi, Márcia M. G., Hartfelder, Klaus, Barchuk, Angel R., Simões, Zilá L. P.
Publicado 2014

Genes related to antiviral activity are differentially expressed in CD4(+) T cell in HAM/TSP patients

por Pinto, Mariana T, Malta, Tathiane M, Pinheiro, Daniel G, Rodrigues, Evandra S, Panepucci, Rodrigo A, Sousa, Alessandra P, Malmegrim, Kelen CR, Palma, Patricia VB, Takayanagui, Osvaldo M, Covas, Dimas T, Kashima, Simone
Publicado 2014

The mitochondrial genome of the terrestrial carnivorous plant Utricularia reniformis (Lentibulariaceae): Structure, comparative analysis and evolutionary landmarks

por Silva, Saura R., Alvarenga, Danillo O., Aranguren, Yani, Penha, Helen A., Fernandes, Camila C., Pinheiro, Daniel G., Oliveira, Marcos T., Michael, Todd P., Miranda, Vitor F. O., Varani, Alessandro M.
Publicado 2017

Draft genome of Thermomonospora sp. CIT 1 (Thermomonosporaceae) and in silico evidence of its functional role in filter cake biomass deconstruction

por Omori, Wellington P., Pinheiro, Daniel G., Kishi, Luciano T., Fernandes, Camila C., Fernandes, Gabriela C., Gomes-Pepe, Elisângela S., Pavani, Claudio D., Lemos, Eliana G. de M., de Souza, Jackson A. M.
Publicado 2019

Searching for molecular markers in head and neck squamous cell carcinomas (HNSCC) by statistical and bioinformatic analysis of larynx-derived SAGE libraries

por Silveira, Nelson JF, Varuzza, Leonardo, Machado-Lima, Ariane, Lauretto, Marcelo S, Pinheiro, Daniel G, Rodrigues, Rodrigo V, Severino, Patrícia, Nobrega, Francisco G, Silva, Wilson A, de B Pereira, Carlos A, Tajara, Eloiza H
Publicado 2008

Spliced genes in muscle from Nelore Cattle and their association with carcass and meat quality

por Silva, Danielly B. S., Fonseca, Larissa F. S., Pinheiro, Daniel G., Magalhães, Ana F. B., Muniz, Maria M. M., Ferro, Jesus A., Baldi, Fernando, Chardulo, Luis A. L., Schnabel, Robert D., Taylor, Jeremy F., Albuquerque, Lucia G.
Publicado 2020

Ultra-Deep Sequencing Reveals the microRNA Expression Pattern of the Human Stomach

por Ribeiro-dos-Santos, Ândrea, Khayat, André S., Silva, Artur, Alencar, Dayse O., Lobato, Jessé, Luz, Larissa, Pinheiro, Daniel G., Varuzza, Leonardo, Assumpção, Monica, Assumpção, Paulo, Santos, Sidney, Zanette, Dalila L., Silva, Wilson A., Burbano, Rommel, Darnet, Sylvain
Publicado 2010

High-throughput sequencing of black pepper root transcriptome

por Gordo, Sheila MC, Pinheiro, Daniel G, Moreira, Edith CO, Rodrigues, Simone M, Poltronieri, Marli C, de Lemos, Oriel F, da Silva, Israel Tojal, Ramos, Rommel TJ, Silva, Artur, Schneider, Horacio, Silva, Wilson A, Sampaio, Iracilda, Darnet, Sylvain
Publicado 2012

Transcriptional profiling reveals intrinsic mRNA alterations in multipotent mesenchymal stromal cells isolated from bone marrow of newly-diagnosed type 1 diabetes patients

por de Lima, Kalil A., de Oliveira, Gislane L. V., Yaochite, Juliana N. U., Pinheiro, Daniel G., de Azevedo, Júlia T. C., Silva Jr, Wilson Araujo, Covas, Dimas T., Couri, Carlos E. B., Simões, Belinda P., Voltarelli, Julio C., Oliveira, Maria C., Malmegrim, Kelen C. R.
Publicado 2016

Exploring integument transcriptomes, cuticle ultrastructure, and cuticular hydrocarbons profiles in eusocial and solitary bee species displaying heterochronic adult cuticle maturat...

por Falcon, Tiago, Pinheiro, Daniel G., Ferreira-Caliman, Maria Juliana, Turatti, Izabel C. C., de Abreu, Fabiano C. Pinto, Galaschi-Teixeira, Juliana S., Martins, Juliana R., Elias-Neto, Moysés, Soares, Michelle P. M., Laure, Marcela B., Figueiredo, Vera L. C., Lopes, Norberto Peporine, Simões, Zilá L. P., Garófalo, Carlos A., Bitondi, Márcia M. G.
Publicado 2019

The use of Open Reading frame ESTs (ORESTES) for analysis of the honey bee transcriptome

por Nunes, Francis MF, Valente, Valeria, Sousa, Josane F, Cunha, Marco AV, Pinheiro, Daniel G, Maia, Rafaela M, Araujo, Daniela D, Costa, Maria CR, Martins, Waleska K, Carvalho, Alex F, Monesi, Nadia, Nascimento, Adriana M, Peixoto, Pablo MV, Silva, Maria FR, Ramos, Ricardo GP, Reis, Luis FL, Dias-Neto, Emmanuel, Souza, Sandro J, Simpson, Andrew JG, Zago, Marco A, Soares, Ademilson EE, Bitondi, Marcia MG, Espreafico, Enilza M, Espindola, Foued S, Paco-Larson, Maria L, Simoes, Zila LP, Hartfelder, Klaus, Silva, Wilson A
Publicado 2004

The nuclear and mitochondrial genomes of Frieseomelitta varia – a highly eusocial stingless bee (Meliponini) with a permanently sterile worker caste

por de Paula Freitas, Flávia C., Lourenço, Anete P., Nunes, Francis M. F., Paschoal, Alexandre R., Abreu, Fabiano C. P., Barbin, Fábio O., Bataglia, Luana, Cardoso-Júnior, Carlos A. M., Cervoni, Mário S., Silva, Saura R., Dalarmi, Fernanda, Del Lama, Marco A., Depintor, Thiago S., Ferreira, Kátia M., Gória, Paula S., Jaskot, Michael C., Lago, Denyse C., Luna-Lucena, Danielle, Moda, Livia M., Nascimento, Leonardo, Pedrino, Matheus, Oliveira, Franciene Rabiço, Sanches, Fernanda C., Santos, Douglas E., Santos, Carolina G., Vieira, Joseana, Barchuk, Angel R., Hartfelder, Klaus, Simões, Zilá L. P., Bitondi, Márcia M. G., Pinheiro, Daniel G.
Publicado 2020

Distinct patterns of somatic alterations in a lymphoblastoid and a tumor genome derived from the same individual

por Galante, Pedro A. F., Parmigiani, Raphael B., Zhao, Qi, Caballero, Otávia L., de Souza, Jorge E., Navarro, Fábio C. P., Gerber, Alexandra L., Nicolás, Marisa F., Salim, Anna Christina M., Silva, Ana Paula M., Edsall, Lee, Devalle, Sylvie, Almeida, Luiz G., Ye, Zhen, Kuan, Samantha, Pinheiro, Daniel G., Tojal, Israel, Pedigoni, Renato G., de Sousa, Rodrigo G. M. A., Oliveira, Thiago Y. K., de Paula, Marcelo G., Ohno-Machado, Lucila, Kirkness, Ewen F., Levy, Samuel, da Silva, Wilson A., Vasconcelos, Ana Tereza R., Ren, Bing, Zago, Marco Antonio, Strausberg, Robert L., Simpson, Andrew J. G., de Souza, Sandro J., Camargo, Anamaria A.
Publicado 2011

The genomes of two key bumblebee species with primitive eusocial organization

por Sadd, Ben M, Barribeau, Seth M, Bloch, Guy, de Graaf, Dirk C, Dearden, Peter, Elsik, Christine G, Gadau, Jürgen, Grimmelikhuijzen, Cornelis JP, Hasselmann, Martin, Lozier, Jeffrey D, Robertson, Hugh M, Smagghe, Guy, Stolle, Eckart, Van Vaerenbergh, Matthias, Waterhouse, Robert M, Bornberg-Bauer, Erich, Klasberg, Steffen, Bennett, Anna K, Câmara, Francisco, Guigó, Roderic, Hoff, Katharina, Mariotti, Marco, Munoz-Torres, Monica, Murphy, Terence, Santesmasses, Didac, Amdam, Gro V, Beckers, Matthew, Beye, Martin, Biewer, Matthias, Bitondi, Márcia MG, Blaxter, Mark L, Bourke, Andrew FG, Brown, Mark JF, Buechel, Severine D, Cameron, Rossanah, Cappelle, Kaat, Carolan, James C, Christiaens, Olivier, Ciborowski, Kate L, Clarke, David F, Colgan, Thomas J, Collins, David H, Cridge, Andrew G, Dalmay, Tamas, Dreier, Stephanie, du Plessis, Louis, Duncan, Elizabeth, Erler, Silvio, Evans, Jay, Falcon, Tiago, Flores, Kevin, Freitas, Flávia CP, Fuchikawa, Taro, Gempe, Tanja, Hartfelder, Klaus, Hauser, Frank, Helbing, Sophie, Humann, Fernanda C, Irvine, Frano, Jermiin, Lars S, Johnson, Claire E, Johnson, Reed M, Jones, Andrew K, Kadowaki, Tatsuhiko, Kidner, Jonathan H, Koch, Vasco, Köhler, Arian, Kraus, F Bernhard, Lattorff, H Michael G, Leask, Megan, Lockett, Gabrielle A, Mallon, Eamonn B, Antonio, David S Marco, Marxer, Monika, Meeus, Ivan, Moritz, Robin FA, Nair, Ajay, Näpflin, Kathrin, Nissen, Inga, Niu, Jinzhi, Nunes, Francis MF, Oakeshott, John G, Osborne, Amy, Otte, Marianne, Pinheiro, Daniel G, Rossié, Nina, Rueppell, Olav, Santos, Carolina G, Schmid-Hempel, Regula, Schmitt, Björn D, Schulte, Christina, Simões, Zilá LP, Soares, Michelle PM, Swevers, Luc, Winnebeck, Eva C, Wolschin, Florian, Yu, Na, Zdobnov, Evgeny M, Aqrawi, Peshtewani K, Blankenburg, Kerstin P, Coyle, Marcus, Francisco, Liezl, Hernandez, Alvaro G, Holder, Michael, Hudson, Matthew E, Jackson, LaRonda, Jayaseelan, Joy, Joshi, Vandita, Kovar, Christie, Lee, Sandra L, Mata, Robert, Mathew, Tittu, Newsham, Irene F, Ngo, Robin, Okwuonu, Geoffrey, Pham, Christopher, Pu, Ling-Ling, Saada, Nehad, Santibanez, Jireh, Simmons, DeNard, Thornton, Rebecca, Venkat, Aarti, Walden, Kimberly KO, Wu, Yuan-Qing, Debyser, Griet, Devreese, Bart, Asher, Claire, Blommaert, Julie, Chipman, Ariel D, Chittka, Lars, Fouks, Bertrand, Liu, Jisheng, O’Neill, Meaghan P, Sumner, Seirian, Puiu, Daniela, Qu, Jiaxin, Salzberg, Steven L, Scherer, Steven E, Muzny, Donna M, Richards, Stephen, Robinson, Gene E, Gibbs, Richard A, Schmid-Hempel, Paul, Worley, Kim C
Publicado 2015