SummonChimera infers integrated viral genomes with nucleotide precision from NGS data

por Katz, Joshua P, Pipas, James M
Publicado 2014

Complete Genome Sequence of Pittsburgh Sewage-Associated Virus 1

por Cantalupo, Paul G., Pipas, James M.
Publicado 2018

Complete Genome Sequence of a Polyomavirus Recovered from a Pomona Leaf-Nosed Bat (Hipposideros pomona) Metagenome Data Set

por Cantalupo, Paul G., Buck, Christopher B., Pipas, James M.
Publicado 2017

Identification of Head and Neck Cancer Subtypes Based on Human Papillomavirus Presence and E2F-Regulated Gene Expression

por Johnson, Molly E., Cantalupo, Paul G., Pipas, James M.
Publicado 2018

Coding-Complete Genome Sequence of a Pollen-Associated Virus Belonging to the Secoviridae Family Recovered from a Japanese Apricot (Prunus mume) Metagenome Data Set

por Fetters, Andrea M., Cantalupo, Paul G., Ashman, Tia-Lynn, Pipas, James M.
Publicado 2019

The Retinoblastoma Tumor Suppressor Regulates a Xenobiotic Detoxification Pathway

por Sáenz Robles, Maria Teresa, Case, Ashley, Chong, Jean-Leon, Leone, Gustavo, Pipas, James M.
Publicado 2011

Human polyomavirus BKV infection of endothelial cells results in interferon pathway induction and persistence

por An, Ping, Sáenz Robles, Maria Teresa, Duray, Alexis M., Cantalupo, Paul G., Pipas, James M.
Publicado 2019

Recurrent integration of human papillomavirus genomes at transcriptional regulatory hubs

por Warburton, Alix, Markowitz, Tovah E., Katz, Joshua P., Pipas, James M., McBride, Alison A.
Publicado 2021

Klassevirus 1, a previously undescribed member of the family Picornaviridae, is globally widespread

por Holtz, Lori R, Finkbeiner, Stacy R, Zhao, Guoyan, Kirkwood, Carl D, Girones, Rosina, Pipas, James M, Wang, David
Publicado 2009

Draft Genome Sequence of a Novel Rhabdovirus Isolated from Deinocerites Mosquitoes

por Xu, Connie L., Cantalupo, Paul G., Sáenz-Robles, Maria Teresa, Baldwin, Amy, Fitzpatrick, Dan, Norris, Douglas E., Jackson, Ethan, Pipas, James M.
Publicado 2018

The pollen virome of wild plants and its association with variation in floral traits and land use

por Fetters, Andrea M., Cantalupo, Paul G., Wei, Na, Robles, Maria Teresa Sáenz, Stanley, Amber, Stephens, Jessica D., Pipas, James M., Ashman, Tia-Lynn
Publicado 2022

Raw Sewage Harbors Diverse Viral Populations

por Cantalupo, Paul G., Calgua, Byron, Zhao, Guoyan, Hundesa, Ayalkibet, Wier, Adam D., Katz, Josh P., Grabe, Michael, Hendrix, Roger W., Girones, Rosina, Wang, David, Pipas, James M.
Publicado 2011

Stability and detection of nucleic acid from viruses and hosts in controlled mosquito blood feeds

por Drummond, Coyne, Gebhardt, Mary E., Sáenz Robles, Maria Teresa, Carpi, Giovanna, Hoyer, Isaiah, Pastusiak, Andrzej, Reddy, Michael R., Norris, Douglas E., Pipas, James M., Jackson, Ethan K.
Publicado 2020

Exploration of Panviral Proteome: High-Throughput Cloning and Functional Implications in Virus-host Interactions

por Yu, Xiaobo, Bian, Xiaofang, Throop, Andrea, Song, Lusheng, Moral, Lerys Del, Park, Jin, Seiler, Catherine, Fiacco, Michael, Steel, Jason, Hunter, Preston, Saul, Justin, Wang, Jie, Qiu, Ji, Pipas, James M., LaBaer, Joshua
Publicado 2014

Merkel Cell Polyomavirus Exhibits Dominant Control of the Tumor Genome and Transcriptome in Virus-Associated Merkel Cell Carcinoma

por Starrett, Gabriel J., Marcelus, Christina, Cantalupo, Paul G., Katz, Joshua P., Cheng, Jingwei, Akagi, Keiko, Thakuria, Manisha, Rabinowits, Guilherme, Wang, Linda C., Symer, David E., Pipas, James M., Harris, Reuben S., DeCaprio, James A.
Publicado 2017

Redeployment of Myc and E2f1-3 drives Rb deficient cell cycles

por Liu, Huayang, Tang, Xing, Srivastava, Arunima, Pécot, Thierry, Daniel, Piotr, Hemmelgarn, Benjamin, Reyes, Stephan, Fackler, Nicholas, Bajwa, Amneet, Kladney, Raleigh, Koivisto, Christopher, Chen, Zhong, Wang, Qianben, Huang, Kun, Machiraju, Raghu, Sáenz-Robles, Maria Teresa, Cantalupo, Paul, Pipas, James M., Leone, Gustavo
Publicado 2015

The Ancient Evolutionary History of Polyomaviruses

por Buck, Christopher B., Van Doorslaer, Koenraad, Peretti, Alberto, Geoghegan, Eileen M., Tisza, Michael J., An, Ping, Katz, Joshua P., Pipas, James M., McBride, Alison A., Camus, Alvin C., McDermott, Alexa J., Dill, Jennifer A., Delwart, Eric, Ng, Terry F. F., Farkas, Kata, Austin, Charlotte, Kraberger, Simona, Davison, William, Pastrana, Diana V., Varsani, Arvind
Publicado 2016

E2F1-3 Switch from Activators in Progenitor Cells to Repressors in Differentiating Cells

por Chong, Jean-Leon, Wenzel, Pamela L., Sáenz-Robles, M. Teresa, Nair, Vivek, Ferrey, Antoney, Hagan, John P., Gomez, Yorman M., Sharma, Nidhi, Chen, Hui-Zi, Ouseph, Madhu, Wang, Shu-Huei, Trikha, Prashant, Culp, Brian, Mezache, Louise, Winton, Douglas J., Sansom, Owen J., Chen, Danian, Bremner, Rod, Cantalupo, Paul G., Robinson, Michael L., Pipas, James M., Leone, Gustavo
Publicado 2009

Evolution on the Biophysical Fitness Landscape of an RNA Virus

por Rotem, Assaf, Serohijos, Adrian W R, Chang, Connie B, Wolfe, Joshua T, Fischer, Audrey E, Mehoke, Thomas S, Zhang, Huidan, Tao, Ye, Lloyd Ung, W, Choi, Jeong-Mo, Rodrigues, João V, Kolawole, Abimbola O, Koehler, Stephan A, Wu, Susan, Thielen, Peter M, Cui, Naiwen, Demirev, Plamen A, Giacobbi, Nicholas S, Julian, Timothy R, Schwab, Kellogg, Lin, Jeffrey S, Smith, Thomas J, Pipas, James M, Wobus, Christiane E, Feldman, Andrew B, Weitz, David A, Shakhnovich, Eugene I
Publicado 2018