Inferring branching pathways in genome-scale metabolic networks

por Pitkänen, Esa, Jouhten, Paula, Rousu, Juho
Publicado 2009

Single-Cell Mononucleotide Microsatellite Analysis Reveals Differential Insertion-Deletion Dynamics in Mouse T Cells

por Aska, Elli-Mari, Zagidullin, Bulat, Pitkänen, Esa, Kauppi, Liisa
Publicado 2022

Towards structured output prediction of enzyme function

por Astikainen, Katja, Holm, Liisa, Pitkänen, Esa, Szedmak, Sandor, Rousu, Juho
Publicado 2008

Towards pan-genome read alignment to improve variation calling

por Valenzuela, Daniel, Norri, Tuukka, Välimäki, Niko, Pitkänen, Esa, Mäkinen, Veli
Publicado 2018

Spectral decoupling for training transferable neural networks in medical imaging

por Pohjonen, Joona, Stürenberg, Carolin, Rannikko, Antti, Mirtti, Tuomas, Pitkänen, Esa
Publicado 2022

(13)C-metabolic flux ratio and novel carbon path analyses confirmed that Trichoderma reesei uses primarily the respirative pathway also on the preferred carbon source glucose

por Jouhten, Paula, Pitkänen, Esa, Pakula, Tiina, Saloheimo, Markku, Penttilä, Merja, Maaheimo, Hannu
Publicado 2009

Whole-exome sequencing identifies novel candidate predisposition genes for familial polycythemia vera

por Hirvonen, Elina A. M., Pitkänen, Esa, Hemminki, Kari, Aaltonen, Lauri A., Kilpivaara, Outi
Publicado 2017

Identification of multiplicatively acting modulatory mutational signatures in cancer

por Kičiatovas, Dovydas, Guo, Qingli, Kailas, Miika, Pesonen, Henri, Corander, Jukka, Kaski, Samuel, Pitkänen, Esa, Mustonen, Ville
Publicado 2022

Mutation-Attention (MuAt): deep representation learning of somatic mutations for tumour typing and subtyping

por Sanjaya, Prima, Maljanen, Katri, Katainen, Riku, Waszak, Sebastian M., Aaltonen, Lauri A., Stegle, Oliver, Korbel, Jan O., Pitkänen, Esa
Publicado 2023

Frequent L1 retrotranspositions originating from TTC28 in colorectal cancer

por Pitkänen, Esa, Cajuso, Tatiana, Katainen, Riku, Kaasinen, Eevi, Välimäki, Niko, Palin, Kimmo, Taipale, Jussi, Aaltonen, Lauri A., Kilpivaara, Outi
Publicado 2014

Detection of subclonal L1 transductions in colorectal cancer by long-distance inverse-PCR and Nanopore sequencing

por Pradhan, Barun, Cajuso, Tatiana, Katainen, Riku, Sulo, Päivi, Tanskanen, Tomas, Kilpivaara, Outi, Pitkänen, Esa, Aaltonen, Lauri A., Kauppi, Liisa, Palin, Kimmo
Publicado 2017

Comparative Genome-Scale Reconstruction of Gapless Metabolic Networks for Present and Ancestral Species

por Pitkänen, Esa, Jouhten, Paula, Hou, Jian, Syed, Muhammad Fahad, Blomberg, Peter, Kludas, Jana, Oja, Merja, Holm, Liisa, Penttilä, Merja, Rousu, Juho, Arvas, Mikko
Publicado 2014

S175: SINGLE-CELL ANALYSIS REVEALS SOMATIC TP53 MUTATIONS EMERGE IN EARLY PROGENITOR CELLS BUT BECOME ENRICHED IN THE ERYTHROID LINEAGE IN ERCC6L2 DISEASE

por Langohr, Laura, Kaaja, Ilse, Douglas, Suvi, Räisänen, Tuulia, Adhikari, Sadiksha, Vähä-Koskela, Markus, Heckman, Caroline, Lahtela, Jenni, Wartiovaara-Kautto, Ulla, Pitkänen, Esa, Kilpivaara, Outi
Publicado 2023

Whole-genome metabolic model of Trichoderma reesei built by comparative reconstruction

por Castillo, Sandra, Barth, Dorothee, Arvas, Mikko, Pakula, Tiina M., Pitkänen, Esa, Blomberg, Peter, Seppanen-Laakso, Tuulikki, Nygren, Heli, Sivasiddarthan, Dhinakaran, Penttilä, Merja, Oja, Merja
Publicado 2016

Multiple clinical characteristics separate MED12-mutation-positive and -negative uterine leiomyomas

por Heinonen, Hanna-Riikka, Pasanen, Annukka, Heikinheimo, Oskari, Tanskanen, Tomas, Palin, Kimmo, Tolvanen, Jaana, Vahteristo, Pia, Sjöberg, Jari, Pitkänen, Esa, Bützow, Ralf, Mäkinen, Netta, Aaltonen, Lauri A.
Publicado 2017

Global metabolomic profiling of uterine leiomyomas

por Heinonen, Hanna-Riikka, Mehine, Miika, Mäkinen, Netta, Pasanen, Annukka, Pitkänen, Esa, Karhu, Auli, Sarvilinna, Nanna S, Sjöberg, Jari, Heikinheimo, Oskari, Bützow, Ralf, Aaltonen, Lauri A, Kaasinen, Eevi
Publicado 2017

Nationwide Registry-Based Analysis of Cancer Clustering Detects Strong Familial Occurrence of Kaposi Sarcoma

por Kaasinen, Eevi, Aavikko, Mervi, Vahteristo, Pia, Patama, Toni, Li, Yilong, Saarinen, Silva, Kilpivaara, Outi, Pitkänen, Esa, Knekt, Paul, Laaksonen, Maarit, Artama, Miia, Lehtonen, Rainer, Aaltonen, Lauri A., Pukkala, Eero
Publicado 2013

Enrichment of cancer-predisposing germline variants in adult and pediatric patients with acute lymphoblastic leukemia

por Douglas, Suvi P. M., Lahtinen, Atte K., Koski, Jessica R., Leimi, Lilli, Keränen, Mikko A. I., Koskenvuo, Minna, Heckman, Caroline A., Jahnukainen, Kirsi, Pitkänen, Esa, Wartiovaara-Kautto, Ulla, Kilpivaara, Outi
Publicado 2022

sPLINK: a hybrid federated tool as a robust alternative to meta-analysis in genome-wide association studies

por Nasirigerdeh, Reza, Torkzadehmahani, Reihaneh, Matschinske, Julian, Frisch, Tobias, List, Markus, Späth, Julian, Weiss, Stefan, Völker, Uwe, Pitkänen, Esa, Heider, Dominik, Wenke, Nina Kerstin, Kaissis, Georgios, Rueckert, Daniel, Kacprowski, Tim, Baumbach, Jan
Publicado 2022

MED12 mutations and FH inactivation are mutually exclusive in uterine leiomyomas

por Kämpjärvi, Kati, Mäkinen, Netta, Mehine, Miika, Välipakka, Salla, Uimari, Outi, Pitkänen, Esa, Heinonen, Hanna-Riikka, Heikkinen, Tuomas, Tolvanen, Jaana, Ahtikoski, Anne, Frizzell, Norma, Sarvilinna, Nanna, Sjöberg, Jari, Bützow, Ralf, Aaltonen, Lauri A, Vahteristo, Pia
Publicado 2016