The importance of tissue specificity for RNA-seq: highlighting the errors of composite structure extractions

por Johnson, Brian R, Atallah, Joel, Plachetzki, David C
Publicado 2013

The Origins of Novel Protein Interactions during Animal Opsin Evolution

por Plachetzki, David C., Degnan, Bernard M., Oakley, Todd H.
Publicado 2007

Cnidocyte discharge is regulated by light and opsin-mediated phototransduction

por Plachetzki, David C, Fong, Caitlin R, Oakley, Todd H
Publicado 2012

The Utility of Shallow RNA-Seq for Documenting Differential Gene Expression in Genes with High and Low Levels of Expression

por Atallah, Joel, Plachetzki, David C., Jasper, W. Cameron, Johnson, Brian R.
Publicado 2013

Extracting phylogenetic signal and accounting for bias in whole-genome data sets supports the Ctenophora as sister to remaining Metazoa

por Borowiec, Marek L., Lee, Ernest K., Chiu, Joanna C., Plachetzki, David C.
Publicado 2015

Signal, bias, and the role of transcriptome assembly quality in phylogenomic inference

por Spillane, Jennifer L., LaPolice, Troy M., MacManes, Matthew D., Plachetzki, David C.
Publicado 2021

The Genome of the Softshell Clam Mya arenaria and the Evolution of Apoptosis

por Plachetzki, David C, Pankey, M Sabrina, MacManes, Matthew D, Lesser, Michael P, Walker, Charles W
Publicado 2020

Epidermal threads reveal the origin of hagfish slime

por Zeng, Yu, Plachetzki, David C, Nieders, Kristen, Campbell, Hannah, Cartee, Marissa, Pankey, M Sabrina, Guillen, Kennedy, Fudge, Douglas
Publicado 2023

Comparative Genomics of Pathogenic and Nonpathogenic Beetle-Vectored Fungi in the Genus Geosmithia

por Schuelke, Taruna A, Wu, Guangxi, Westbrook, Anthony, Woeste, Keith, Plachetzki, David C, Broders, Kirk, MacManes, Matthew D
Publicado 2017

Phylogenomics provides a robust topology of the major cnidarian lineages and insights on the origins of key organismal traits

por Kayal, Ehsan, Bentlage, Bastian, Sabrina Pankey, M., Ohdera, Aki H., Medina, Monica, Plachetzki, David C., Collins, Allen G., Ryan, Joseph F.
Publicado 2018

Gene duplication and the origins of morphological complexity in pancrustacean eyes, a genomic approach

por Rivera, Ajna S, Pankey, M Sabrina, Plachetzki, David C, Villacorta, Carlos, Syme, Anna E, Serb, Jeanne M, Omilian, Angela R, Oakley, Todd H
Publicado 2010

Comparative validation of the D. melanogaster modENCODE transcriptome annotation

por Chen, Zhen-Xia, Sturgill, David, Qu, Jiaxin, Jiang, Huaiyang, Park, Soo, Boley, Nathan, Suzuki, Ana Maria, Fletcher, Anthony R., Plachetzki, David C., FitzGerald, Peter C., Artieri, Carlo G., Atallah, Joel, Barmina, Olga, Brown, James B., Blankenburg, Kerstin P., Clough, Emily, Dasgupta, Abhijit, Gubbala, Sai, Han, Yi, Jayaseelan, Joy C., Kalra, Divya, Kim, Yoo-Ah, Kovar, Christie L., Lee, Sandra L., Li, Mingmei, Malley, James D., Malone, John H., Mathew, Tittu, Mattiuzzo, Nicolas R., Munidasa, Mala, Muzny, Donna M., Ongeri, Fiona, Perales, Lora, Przytycka, Teresa M., Pu, Ling-Ling, Robinson, Garrett, Thornton, Rebecca L., Saada, Nehad, Scherer, Steven E., Smith, Harold E., Vinson, Charles, Warner, Crystal B., Worley, Kim C., Wu, Yuan-Qing, Zou, Xiaoyan, Cherbas, Peter, Kellis, Manolis, Eisen, Michael B., Piano, Fabio, Kionte, Karin, Fitch, David H., Sternberg, Paul W., Cutter, Asher D., Duff, Michael O., Hoskins, Roger A., Graveley, Brenton R., Gibbs, Richard A., Bickel, Peter J., Kopp, Artyom, Carninci, Piero, Celniker, Susan E., Oliver, Brian, Richards, Stephen
Publicado 2014