A miRNA-regulatory network explains how dysregulated miRNAs perturb oncogenic processes across diverse cancers

por Plaisier, Christopher L., Pan, Min, Baliga, Nitin S.
Publicado 2012

miRvestigator: web application to identify miRNAs responsible for co-regulated gene expression patterns discovered through transcriptome profiling

por Plaisier, Christopher L., Bare, J. Christopher, Baliga, Nitin S.
Publicado 2011

cMonkey(2): Automated, systematic, integrated detection of co-regulated gene modules for any organism

por Reiss, David J., Plaisier, Christopher L., Wu, Wei-Ju, Baliga, Nitin S.
Publicado 2015

Inference of Expanded Lrp-Like Feast/Famine Transcription Factor Targets in a Non-Model Organism Using Protein Structure-Based Prediction

por Ashworth, Justin, Plaisier, Christopher L., Lo, Fang Yin, Reiss, David J., Baliga, Nitin S.
Publicado 2014

Structure-based predictions broadly link transcription factor mutations to gene expression changes in cancers

por Ashworth, Justin, Bernard, Brady, Reynolds, Sheila, Plaisier, Christopher L., Shmulevich, Ilya, Baliga, Nitin S.
Publicado 2014

Systematic integration of protein-affecting mutations, gene fusions, and copy number alterations into a comprehensive somatic mutational profile

por Striker, Shawn S., Wilferd, Sierra F., Lewis, Erika M., O'Connor, Samantha A., Plaisier, Christopher L.
Publicado 2023

Molecular subtypes of ALS are associated with differences in patient prognosis

por Eshima, Jarrett, O’Connor, Samantha A., Marschall, Ethan, Bowser, Robert, Plaisier, Christopher L., Smith, Barbara S.
Publicado 2023

Niche adaptation by expansion and reprogramming of general transcription factors

por Turkarslan, Serdar, Reiss, David J, Gibbins, Goodwin, Su, Wan Lin, Pan, Min, Bare, J Christopher, Plaisier, Christopher L, Baliga, Nitin S
Publicado 2011

Bicluster Sampled Coherence Metric (BSCM) provides an accurate environmental context for phenotype predictions

por Danziger, Samuel A, Reiss, David J, Ratushny, Alexander V, Smith, Jennifer J, Plaisier, Christopher L, Aitchison, John D, Baliga, Nitin S
Publicado 2015

A Systems Genetics Approach Implicates USF1, FADS3, and Other Causal Candidate Genes for Familial Combined Hyperlipidemia

por Plaisier, Christopher L., Horvath, Steve, Huertas-Vazquez, Adriana, Cruz-Bautista, Ivette, Herrera, Miguel F., Tusie-Luna, Teresa, Aguilar-Salinas, Carlos, Pajukanta, Päivi
Publicado 2009

Single cell analysis reveals satellite cell heterogeneity for proinflammatory chemokine expression

por Andre, Alexander B., Rees, Katherina P., O’Connor, Samantha, Severson, Grant W., Newbern, Jason M., Wilson-Rawls, Jeanne, Plaisier, Christopher L., Rawls, Alan
Publicado 2023

Nonredundant, isoform-specific roles of HDAC1 in glioma stem cells

por Lo Cascio, Costanza, McNamara, James B., Melendez, Ernesto L., Lewis, Erika M., Dufault, Matthew E., Sanai, Nader, Plaisier, Christopher L., Mehta, Shwetal
Publicado 2021

Evolution of context dependent regulation by expansion of feast/famine regulatory proteins

por Plaisier, Christopher L, Lo, Fang-Yin, Ashworth, Justin, Brooks, Aaron N, Beer, Karlyn D, Kaur, Amardeep, Pan, Min, Reiss, David J, Facciotti, Marc T, Baliga, Nitin S
Publicado 2014

A system-level model for the microbial regulatory genome

por Brooks, Aaron N, Reiss, David J, Allard, Antoine, Wu, Wei-Ju, Salvanha, Diego M, Plaisier, Christopher L, Chandrasekaran, Sriram, Pan, Min, Kaur, Amardeep, Baliga, Nitin S
Publicado 2014

A high-resolution network model for global gene regulation in Mycobacterium tuberculosis

por Peterson, Eliza J.R., Reiss, David J., Turkarslan, Serdar, Minch, Kyle J., Rustad, Tige, Plaisier, Christopher L., Longabaugh, William J.R., Sherman, David R., Baliga, Nitin S.
Publicado 2014

A nonsynonymous SNP within PCDH15 is associated with lipid traits in familial combined hyperlipidemia

por Huertas-Vazquez, Adriana, Plaisier, Christopher L., Geng, Ruishuang, Haas, Blake E., Lee, Jenny, Greevenbroek, Marleen M., van der Kallen, Carla, de Bruin, Tjerk W. A., Taskinen, Marja-Riitta, Alagramam, Kumar N., Pajukanta, Päivi
Publicado 2009

N(6)-methyladenosine mRNA marking promotes selective translation of regulons required for human erythropoiesis

por Kuppers, Daniel A., Arora, Sonali, Lim, Yiting, Lim, Andrea R., Carter, Lucas M., Corrin, Philip D., Plaisier, Christopher L., Basom, Ryan, Delrow, Jeffrey J., Wang, Shiyan, Hansen He, Housheng, Torok-Storb, Beverly, Hsieh, Andrew C., Paddison, Patrick J.
Publicado 2019

Neural G0: a quiescent‐like state found in neuroepithelial‐derived cells and glioma

por O’Connor, Samantha A, Feldman, Heather M, Arora, Sonali, Hoellerbauer, Pia, Toledo, Chad M, Corrin, Philip, Carter, Lucas, Kufeld, Megan, Bolouri, Hamid, Basom, Ryan, Delrow, Jeffrey, McFaline‐Figueroa, José L, Trapnell, Cole, Pollard, Steven M, Patel, Anoop, Paddison, Patrick J, Plaisier, Christopher L
Publicado 2021

The Transcription Factor Nfatc2 Regulates β-Cell Proliferation and Genes Associated with Type 2 Diabetes in Mouse and Human Islets

por Keller, Mark P., Paul, Pradyut K., Rabaglia, Mary E., Stapleton, Donnie S., Schueler, Kathryn L., Broman, Aimee Teo, Ye, Shuyun Isabella, Leng, Ning, Brandon, Christopher J., Neto, Elias Chaibub, Plaisier, Christopher L., Simonett, Shane P., Kebede, Melkam A., Sheynkman, Gloria M., Klein, Mark A., Baliga, Nitin S., Smith, Lloyd M., Broman, Karl W., Yandell, Brian S., Kendziorski, Christina, Attie, Alan D.
Publicado 2016

Integrated molecular and multiparametric MRI mapping of high-grade glioma identifies regional biologic signatures

por Hu, Leland S., D’Angelo, Fulvio, Weiskittel, Taylor M., Caruso, Francesca P., Fortin Ensign, Shannon P., Blomquist, Mylan R., Flick, Matthew J., Wang, Lujia, Sereduk, Christopher P., Meng-Lin, Kevin, De Leon, Gustavo, Nespodzany, Ashley, Urcuyo, Javier C., Gonzales, Ashlyn C, Curtin, Lee, Lewis, Erika M., Singleton, Kyle W., Dondlinger, Timothy, Anil, Aliya, Semmineh, Natenael B., Noviello, Teresa, Patel, Reyna A., Wang, Panwen, Wang, Junwen, Eschbacher, Jennifer M., Hawkins-Daarud, Andrea, Jackson, Pamela R., Grunfeld, Itamar S., Elrod, Christian, Mazza, Gina L., McGee, Sam C., Paulson, Lisa, Clark-Swanson, Kamala, Lassiter-Morris, Yvette, Smith, Kris A., Nakaji, Peter, Bendok, Bernard R., Zimmerman, Richard S., Krishna, Chandan, Patra, Devi P., Patel, Naresh P., Lyons, Mark, Neal, Matthew, Donev, Kliment, Mrugala, Maciej M., Porter, Alyx B., Beeman, Scott C., Jensen, Todd R., Schmainda, Kathleen M., Zhou, Yuxiang, Baxter, Leslie C., Plaisier, Christopher L., Li, Jing, Li, Hu, Lasorella, Anna, Quarles, C. Chad, Swanson, Kristin R., Ceccarelli, Michele, Iavarone, Antonio, Tran, Nhan L.
Publicado 2023