Recovery of Metagenome-Assembled Genomes from a Human Fecal Sample with Pacific Biosciences High-Fidelity Sequencing

por Plaza Oñate, Florian, Roume, Hugo, Almeida, Mathieu
Publicado 2022

StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs

por Da Silva, Kévin, Pons, Nicolas, Berland, Magali, Plaza Oñate, Florian, Almeida, Mathieu, Peterlongo, Pierre
Publicado 2021

Draft Genome Sequence of Isolate POC01, a Novel Anaerobic Member of the Oscillospiraceae Family, Isolated from Human Feces

por Meslier, Victoria, Plaza Oñate, Florian, Ania, Maryne, Nehlich, Mélanie, Belotserkovsky, Ilia, Bellais, Samuel, Thomas, Vincent
Publicado 2022

Four functional profiles for fibre and mucin metabolism in the human gut microbiome

por Labarthe, Simon, Plancade, Sandra, Raguideau, Sebastien, Plaza Oñate, Florian, Le Chatelier, Emmanuelle, Leclerc, Marion, Laroche, Beatrice
Publicado 2023

Benchmarking second and third-generation sequencing platforms for microbial metagenomics

por Meslier, Victoria, Quinquis, Benoit, Da Silva, Kévin, Plaza Oñate, Florian, Pons, Nicolas, Roume, Hugo, Podar, Mircea, Almeida, Mathieu
Publicado 2022

MSPminer: abundance-based reconstitution of microbial pan-genomes from shotgun metagenomic data

por Plaza Oñate, Florian, Le Chatelier, Emmanuelle, Almeida, Mathieu, Cervino, Alessandra C L, Gauthier, Franck, Magoulès, Frédéric, Ehrlich, S Dusko, Pichaud, Matthieu
Publicado 2019

Quality control of microbiota metagenomics by k-mer analysis

por Plaza Onate, Florian, Batto, Jean-Michel, Juste, Catherine, Fadlallah, Jehane, Fougeroux, Cyrielle, Gouas, Doriane, Pons, Nicolas, Kennedy, Sean, Levenez, Florence, Dore, Joel, Ehrlich, S Dusko, Gorochov, Guy, Larsen, Martin
Publicado 2015

Changes in Gut Microbiota of Patients with Atopic Dermatitis During Balneotherapy

por Thirion, Florence, Guilly, Susie, Fromentin, Sébastien, Plaza Oñate, Florian, Alvarez, Anne-Sophie, Le Chatelier, Emmanuelle, Pons, Nicolas, Levenez, Florence, Quinquis, Benoît, Ehrlich, Stanislav, Doré, Joel, Martin, Richard, Seité, Sophie
Publicado 2022

High engraftment capacity of frozen ready-to-use human fecal microbiota transplants assessed in germ-free mice

por Berland, Magali, Cadiou, Julie, Levenez, Florence, Galleron, Nathalie, Quinquis, Benoît, Thirion, Florence, Gauthier, Franck, Le Chatelier, Emmanuelle, Plaza Oñate, Florian, Schwintner, Carole, Rabot, Sylvie, Lepage, Patricia, Ehrlich, Dusko, Doré, Joël, Juste, Catherine
Publicado 2021

In Vitro Modelling of Oral Microbial Invasion in the Human Colon

por Etienne-Mesmin, Lucie, Meslier, Victoria, Uriot, Ophélie, Fournier, Elora, Deschamps, Charlotte, Denis, Sylvain, David, Aymeric, Jegou, Sarah, Morabito, Christian, Quinquis, Benoit, Thirion, Florence, Plaza Oñate, Florian, Le Chatelier, Emmanuelle, Ehrlich, S. Dusko, Blanquet-Diot, Stéphanie, Almeida, Mathieu
Publicado 2023

Diet Supplementation with NUTRIOSE, a Resistant Dextrin, Increases the Abundance of Parabacteroides distasonis in the Human Gut

por Thirion, Florence, Da Silva, Kévin, Plaza Oñate, Florian, Alvarez, Anne‐Sophie, Thabuis, Clémentine, Pons, Nicolas, Berland, Magali, Le Chatelier, Emmanuelle, Galleron, Nathalie, Levenez, Florence, Vergara, Coralie, Chevallier, Hélène, Guérin‐Deremaux, Laetitia, Doré, Joël, Ehrlich, Stanislav D.
Publicado 2022

Both Disease Activity and HLA–B27 Status Are Associated With Gut Microbiome Dysbiosis in Spondyloarthritis Patients

por Berland, Magali, Meslier, Victoria, Berreira Ibraim, Samar, Le Chatelier, Emmanuelle, Pons, Nicolas, Maziers, Nicolas, Thirion, Florence, Gauthier, Franck, Plaza Oñate, Florian, Furet, Jean‐Pierre, Leboime, Ariane, Said‐Nahal, Roula, Levenez, Florence, Galleron, Nathalie, Quinquis, Benoît, Langella, Philippe, Ehrlich, Stanislav Dusko, Breban, Maxime
Publicado 2022

Alteration of Gut Microbiome in Patients With Schizophrenia Indicates Links Between Bacterial Tyrosine Biosynthesis and Cognitive Dysfunction

por Thirion, Florence, Speyer, Helene, Hansen, Tue Haldor, Nielsen, Trine, Fan, Yong, Le Chatelier, Emmanuelle, Fromentin, Sébastien, Berland, Magali, Plaza Oñate, Florian, Pons, Nicolas, Galleron, Nathalie, Levenez, Florence, Markó, Lajos, Birkner, Till, Jørgensen, Torben, Forslund, Sofia K., Vestergaard, Henrik, Hansen, Torben, Nordentoft, Merete, Mors, Ole, Benros, Michael E., Pedersen, Oluf, Ehrlich, Stanislav D.
Publicado 2022