Genetic and Metabolomic Dissection of the Ergothioneine and Selenoneine Biosynthetic Pathway in the Fission Yeast, S. pombe, and Construction of an Overproduction System

por Pluskal, Tomáš, Ueno, Masaru, Yanagida, Mitsuhiro
Publicado 2014

Impaired coenzyme A synthesis in fission yeast causes defective mitosis, quiescence-exit failure, histone hypoacetylation and fragile DNA

por Nakamura, Takahiro, Pluskal, Tomáš, Nakaseko, Yukinobu, Yanagida, Mitsuhiro
Publicado 2012

Metabolomic Analysis of Fission Yeast at the Onset of Nitrogen Starvation

por Sajiki, Kenichi, Pluskal, Tomáš, Shimanuki, Mizuki, Yanagida, Mitsuhiro
Publicado 2013

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

por Pluskal, Tomáš, Castillo, Sandra, Villar-Briones, Alejandro, Orešič, Matej
Publicado 2010

Specific biomarkers for stochastic division patterns and starvation-induced quiescence under limited glucose levels in fission yeast

por Pluskal, Tomáš, Hayashi, Takeshi, Saitoh, Shigeaki, Fujisawa, Asuka, Yanagida, Mitsuhiro
Publicado 2011

transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation

por Fallon, Timothy R., Čalounová, Tereza, Mokrejš, Martin, Weng, Jing-Ke, Pluskal, Tomáš
Publicado 2023

Genetic regulation of mitotic competence in G(0) quiescent cells

por Sajiki, Kenichi, Tahara, Yuria, Uehara, Lisa, Sasaki, Toshio, Pluskal, Tomáš, Yanagida, Mitsuhiro
Publicado 2018

Klf1, a C2H2 Zinc Finger-Transcription Factor, Is Required for Cell Wall Maintenance during Long-Term Quiescence in Differentiated G0 Phase

por Shimanuki, Mizuki, Uehara, Lisa, Pluskal, Tomáš, Yoshida, Tomoko, Kokubu, Aya, Kawasaki, Yosuke, Yanagida, Mitsuhiro
Publicado 2013

Metabolism of Skin-Absorbed Resveratrol into Its Glucuronized Form in Mouse Skin

por Murakami, Itsuo, Chaleckis, Romanas, Pluskal, Tomáš, Ito, Ken, Hori, Kousuke, Ebe, Masahiro, Yanagida, Mitsuhiro, Kondoh, Hiroshi
Publicado 2014

The chloroalkaloid (−)-acutumine is biosynthesized via a Fe(II)- and 2-oxoglutarate-dependent halogenase in Menispermaceae plants

por Kim, Colin Y., Mitchell, Andrew J., Glinkerman, Christopher M., Li, Fu-Shuang, Pluskal, Tomáš, Weng, Jing-Ke
Publicado 2020

Machine Learning-Guided Protein Engineering

por Kouba, Petr, Kohout, Pavel, Haddadi, Faraneh, Bushuiev, Anton, Samusevich, Raman, Sedlar, Jiri, Damborsky, Jiri, Pluskal, Tomas, Sivic, Josef, Mazurenko, Stanislav
Publicado 2023

Genetic defects in SAPK signalling, chromatin regulation, vesicle transport and CoA-related lipid metabolism are rescued by rapamycin in fission yeast

por Sajiki, Kenichi, Tahara, Yuria, Villar-Briones, Alejandro, Pluskal, Tomáš, Teruya, Takayuki, Mori, Ayaka, Hatanaka, Mitsuko, Ebe, Masahiro, Nakamura, Takahiro, Aoki, Keita, Nakaseko, Yukinobu, Yanagida, Mitsuhiro
Publicado 2018

Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions

por Damiani, Tito, Bonciarelli, Stefano, Thallinger, Gerhard G., Koehler, Nikolai, Krettler, Christoph A., Salihoğlu, Arif K., Korf, Ansgar, Pauling, Josch K., Pluskal, Tomáš, Ni, Zhixu, Goracci, Laura
Publicado 2023

Correction to “Software and Computational Tools for LC-MS-Based Epilipidomics: Challenges and Solutions”

por Damiani, Tito, Bonciarelli, Stefano, Thallinger, Gerhard G., Koehler, Nikolai, Krettler, Christoph A., Salihoğlu, Arif K., Korf, Ansgar, Pauling, Josch K., Pluskal, Tomáš, Ni, Zhixu, Goracci, Laura
Publicado 2023

The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching

por Willighagen, Egon L., Mayfield, John W., Alvarsson, Jonathan, Berg, Arvid, Carlsson, Lars, Jeliazkova, Nina, Kuhn, Stefan, Pluskal, Tomáš, Rojas-Chertó, Miquel, Spjuth, Ola, Torrance, Gilleain, Evelo, Chris T., Guha, Rajarshi, Steinbeck, Christoph
Publicado 2017

Erratum to: The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching

por Willighagen, Egon L., Mayfield, John W., Alvarsson, Jonathan, Berg, Arvid, Carlsson, Lars, Jeliazkova, Nina, Kuhn, Stefan, Pluskal, Tomáš, Rojas-Chertó, Miquel, Spjuth, Ola, Torrance, Gilleain, Evelo, Chris T., Guha, Rajarshi, Steinbeck, Christoph
Publicado 2017

Sequenceserver: A Modern Graphical User Interface for Custom BLAST Databases

por Priyam, Anurag, Woodcroft, Ben J, Rai, Vivek, Moghul, Ismail, Munagala, Alekhya, Ter, Filip, Chowdhary, Hiten, Pieniak, Iwo, Maynard, Lawrence J, Gibbins, Mark Anthony, Moon, HongKee, Davis-Richardson, Austin, Uludag, Mahmut, Watson-Haigh, Nathan S, Challis, Richard, Nakamura, Hiroyuki, Favreau, Emeline, Gómez, Esteban A, Pluskal, Tomás, Leonard, Guy, Rumpf, Wolfgang, Wurm, Yannick
Publicado 2019

Ion identity molecular networking for mass spectrometry-based metabolomics in the GNPS environment

por Schmid, Robin, Petras, Daniel, Nothias, Louis-Félix, Wang, Mingxun, Aron, Allegra T., Jagels, Annika, Tsugawa, Hiroshi, Rainer, Johannes, Garcia-Aloy, Mar, Dührkop, Kai, Korf, Ansgar, Pluskal, Tomáš, Kameník, Zdeněk, Jarmusch, Alan K., Caraballo-Rodríguez, Andrés Mauricio, Weldon, Kelly C., Nothias-Esposito, Melissa, Aksenov, Alexander A., Bauermeister, Anelize, Albarracin Orio, Andrea, Grundmann, Carlismari O., Vargas, Fernando, Koester, Irina, Gauglitz, Julia M., Gentry, Emily C., Hövelmann, Yannick, Kalinina, Svetlana A., Pendergraft, Matthew A., Panitchpakdi, Morgan, Tehan, Richard, Le Gouellec, Audrey, Aleti, Gajender, Mannochio Russo, Helena, Arndt, Birgit, Hübner, Florian, Hayen, Heiko, Zhi, Hui, Raffatellu, Manuela, Prather, Kimberly A., Aluwihare, Lihini I., Böcker, Sebastian, McPhail, Kerry L., Humpf, Hans-Ulrich, Karst, Uwe, Dorrestein, Pieter C.
Publicado 2021

Feature-Based Molecular Networking in the GNPS Analysis Environment

por Nothias, Louis Felix, Petras, Daniel, Schmid, Robin, Dührkop, Kai, Rainer, Johannes, Sarvepalli, Abinesh, Protsyuk, Ivan, Ernst, Madeleine, Tsugawa, Hiroshi, Fleischauer, Markus, Aicheler, Fabian, Aksenov, Alexander, Alka, Oliver, Allard, Pierre-Marie, Barsch, Aiko, Cachet, Xavier, Caraballo, Mauricio, Silva, Ricardo R. Da, Dang, Tam, Garg, Neha, Gauglitz, Julia M., Gurevich, Alexey, Isaac, Giorgis, Jarmusch, Alan K., Kameník, Zdeněk, Kang, Kyo Bin, Kessler, Nikolas, Koester, Irina, Korf, Ansgar, Gouellec, Audrey Le, Ludwig, Marcus, H., Christian Martin, McCall, Laura-Isobel, McSayles, Jonathan, Meyer, Sven W., Mohimani, Hosein, Morsy, Mustafa, Moyne, Oriane, Neumann, Steffen, Neuweger, Heiko, Nguyen, Ngoc Hung, Nothias-Esposito, Melissa, Paolini, Julien, Phelan, Vanessa V., Pluskal, Tomáš, Quinn, Robert A., Rogers, Simon, Shrestha, Bindesh, Tripathi, Anupriya, van der Hooft, Justin J.J., Vargas, Fernando, Weldon, Kelly C., Witting, Michael, Yang, Heejung, Zhang, Zheng, Zubeil, Florian, Kohlbacher, Oliver, Böcker, Sebastian, Alexandrov, Theodore, Bandeira, Nuno, Wang, Mingxun, Dorrestein, Pieter C.
Publicado 2020