A Framework for Annotation of Antigen Specificities in High-Throughput T-Cell Repertoire Sequencing Studies

por Pogorelyy, Mikhail V., Shugay, Mikhail
Publicado 2019

Immune fingerprinting through repertoire similarity

por Dupic, Thomas, Bensouda Koraichi, Meriem, Minervina, Anastasia A., Pogorelyy, Mikhail V., Mora, Thierry, Walczak, Aleksandra M.
Publicado 2021

Huge Overlap of Individual TCR Beta Repertoires

por Shugay, Mikhail, Bolotin, Dmitriy A., Putintseva, Ekaterina V., Pogorelyy, Mikhail V., Mamedov, Ilgar Z., Chudakov, Dmitriy M.
Publicado 2013

Detecting T cell receptors involved in immune responses from single repertoire snapshots

por Pogorelyy, Mikhail V., Minervina, Anastasia A., Shugay, Mikhail, Chudakov, Dmitriy M., Lebedev, Yuri B., Mora, Thierry, Walczak, Aleksandra M.
Publicado 2019

Method for identification of condition-associated public antigen receptor sequences

por Pogorelyy, Mikhail V, Minervina, Anastasia A, Chudakov, Dmitriy M, Mamedov, Ilgar Z, Lebedev, Yuri B, Mora, Thierry, Walczak, Aleksandra M
Publicado 2018

Resolving SARS-CoV-2 CD4(+) T cell specificity via reverse epitope discovery

por Pogorelyy, Mikhail V., Rosati, Elisa, Minervina, Anastasia A., Mettelman, Robert C., Scheffold, Alexander, Franke, Andre, Bacher, Petra, Thomas, Paul G.
Publicado 2022

tcR: an R package for T cell receptor repertoire advanced data analysis

por Nazarov, Vadim I., Pogorelyy, Mikhail V., Komech, Ekaterina A., Zvyagin, Ivan V., Bolotin, Dmitry A., Shugay, Mikhail, Chudakov, Dmitry M., Lebedev, Yury B., Mamedov, Ilgar Z.
Publicado 2015

The Evidence for Increased L1 Activity in the Site of Human Adult Brain Neurogenesis

por Kurnosov, Alexey A., Ustyugova, Svetlana V., Nazarov, Vadim I., Minervina, Anastasia A., Komkov, Alexander Yu., Shugay, Mikhail, Pogorelyy, Mikhail V., Khodosevich, Konstantin V., Mamedov, Ilgar Z., Lebedev, Yuri B.
Publicado 2015

Corrigendum to: Identification of Disease-associated Traits and Clonotypes in the T Cell Receptor Repertoire of Monozygotic Twins Affected by Inflammatory Bowel Diseases

por Rosati, Elisa, Pogorelyy, Mikhail V, Dowds, C Marie, Moller, Frederik T, Sorensen, Signe B, Lebedev, Yuri B, Frey, Norbert, Schreiber, Stefan, Spehlmann, Martina E, Andersen, Vibeke, Mamedov, Ilgar Z, Franke, Andre
Publicado 2020

Identification of Disease-associated Traits and Clonotypes in the T Cell Receptor Repertoire of Monozygotic Twins Affected by Inflammatory Bowel Diseases

por Rosati, Elisa, Pogorelyy, Mikhail V, Dowds, C Marie, Moller, Frederik T, Sorensen, Signe B, Lebedev, Yuri B, Frey, Norbert, Schreiber, Stefan, Spehlmann, Martina E, Andersen, Vibeke, Mamedov, Ilgar Z, Franke, Andre
Publicado 2020

Primary and secondary anti-viral response captured by the dynamics and phenotype of individual T cell clones

por Minervina, Anastasia A, Pogorelyy, Mikhail V, Komech, Ekaterina A, Karnaukhov, Vadim K, Bacher, Petra, Rosati, Elisa, Franke, Andre, Chudakov, Dmitriy M, Mamedov, Ilgar Z, Lebedev, Yuri B, Mora, Thierry, Walczak, Aleksandra M
Publicado 2020

Persisting fetal clonotypes influence the structure and overlap of adult human T cell receptor repertoires

por Pogorelyy, Mikhail V., Elhanati, Yuval, Marcou, Quentin, Sycheva, Anastasiia L., Komech, Ekaterina A., Nazarov, Vadim I., Britanova, Olga V., Chudakov, Dmitriy M., Mamedov, Ilgar Z., Lebedev, Yury B., Mora, Thierry, Walczak, Aleksandra M.
Publicado 2017

Exploring the pre-immune landscape of antigen-specific T cells

por Pogorelyy, Mikhail V., Fedorova, Alla D., McLaren, James E., Ladell, Kristin, Bagaev, Dmitri V., Eliseev, Alexey V., Mikelov, Artem I., Koneva, Anna E., Zvyagin, Ivan V., Price, David A., Chudakov, Dmitry M., Shugay, Mikhail
Publicado 2018

Longitudinal high-throughput TCR repertoire profiling reveals the dynamics of T-cell memory formation after mild COVID-19 infection

por Minervina, Anastasia A, Komech, Ekaterina A, Titov, Aleksei, Bensouda Koraichi, Meriem, Rosati, Elisa, Mamedov, Ilgar Z, Franke, Andre, Efimov, Grigory A, Chudakov, Dmitriy M, Mora, Thierry, Walczak, Aleksandra M, Lebedev, Yuri B, Pogorelyy, Mikhail V
Publicado 2021

Mother and Child T Cell Receptor Repertoires: Deep Profiling Study

por Putintseva, Ekaterina V., Britanova, Olga V., Staroverov, Dmitriy B., Merzlyak, Ekaterina M., Turchaninova, Maria A., Shugay, Mikhail, Bolotin, Dmitriy A., Pogorelyy, Mikhail V., Mamedov, Ilgar Z., Bobrynina, Vlasta, Maschan, Mikhail, Lebedev, Yuri B., Chudakov, Dmitriy M.
Publicado 2013

Inactivated tick-borne encephalitis vaccine elicits several overlapping waves of T cell response

por Sycheva, Anastasiia L., Komech, Ekaterina A., Pogorelyy, Mikhail V., Minervina, Anastasia A., Urazbakhtin, Shamil Z., Salnikova, Maria A., Vorovitch, Mikhail F., Kopantzev, Eugene P., Zvyagin, Ivan V., Komkov, Alexander Y., Mamedov, Ilgar Z., Lebedev, Yuri B.
Publicado 2022

VDJtools: Unifying Post-analysis of T Cell Receptor Repertoires

por Shugay, Mikhail, Bagaev, Dmitriy V., Turchaninova, Maria A., Bolotin, Dmitriy A., Britanova, Olga V., Putintseva, Ekaterina V., Pogorelyy, Mikhail V., Nazarov, Vadim I., Zvyagin, Ivan V., Kirgizova, Vitalina I., Kirgizov, Kirill I., Skorobogatova, Elena V., Chudakov, Dmitriy M.
Publicado 2015

The Changing Landscape of Naive T Cell Receptor Repertoire With Human Aging

por Egorov, Evgeny S., Kasatskaya, Sofya A., Zubov, Vasiliy N., Izraelson, Mark, Nakonechnaya, Tatiana O., Staroverov, Dmitriy B., Angius, Andrea, Cucca, Francesco, Mamedov, Ilgar Z., Rosati, Elisa, Franke, Andre, Shugay, Mikhail, Pogorelyy, Mikhail V., Chudakov, Dmitriy M., Britanova, Olga V.
Publicado 2018

Precise tracking of vaccine-responding T cell clones reveals convergent and personalized response in identical twins

por Pogorelyy, Mikhail V., Minervina, Anastasia A., Touzel, Maximilian Puelma, Sycheva, Anastasiia L., Komech, Ekaterina A., Kovalenko, Elena I., Karganova, Galina G., Egorov, Evgeniy S., Komkov, Alexander Yu., Chudakov, Dmitriy M., Mamedov, Ilgar Z., Mora, Thierry, Walczak, Aleksandra M., Lebedev, Yuri B.
Publicado 2018

Common Trajectories of Highly Effective CD19-Specific CAR T Cells Identified by Endogenous T-cell Receptor Lineages

por Wilson, Taylor L., Kim, Hyunjin, Chou, Ching-Heng, Langfitt, Deanna, Mettelman, Robert C., Minervina, Anastasia A., Allen, E. Kaitlynn, Métais, Jean-Yves, Pogorelyy, Mikhail V., Riberdy, Janice M., Velasquez, M. Paulina, Kottapalli, Pratibha, Trivedi, Sanchit, Olsen, Scott R., Lockey, Timothy, Willis, Catherine, Meagher, Michael M., Triplett, Brandon M., Talleur, Aimee C., Gottschalk, Stephen, Crawford, Jeremy Chase, Thomas, Paul G.
Publicado 2022