Phylodynamic Analysis of Ebola Virus in the 2014 Sierra Leone Epidemic

por Volz, Erik, Pond, Sergei
Publicado 2014

Purifying Selection Can Obscure the Ancient Age of Viral Lineages

por Wertheim, Joel O., Kosakovsky Pond, Sergei L.
Publicado 2011

Relative evolutionary rate inference in HyPhy with LEISR

por Spielman, Stephanie J., Kosakovsky Pond, Sergei L.
Publicado 2018

Relative Evolutionary Rates in Proteins Are Largely Insensitive to the Substitution Model

por Spielman, Stephanie J, Kosakovsky Pond, Sergei L
Publicado 2018

Stepwise Evolution and Exceptional Conservation of ORF1a/b Overlap in Coronaviruses

por Mei, Han, Kosakovsky Pond, Sergei, Nekrutenko, Anton
Publicado 2021

On the Validity of Evolutionary Models with Site-Specific Parameters

por Scheffler, Konrad, Murrell, Ben, Kosakovsky Pond, Sergei L.
Publicado 2014

phylotree.js - a JavaScript library for application development and interactive data visualization in phylogenetics

por Shank, Stephen D., Weaver, Steven, Kosakovsky Pond, Sergei L.
Publicado 2018

Correcting the Bias of Empirical Frequency Parameter Estimators in Codon Models

por Kosakovsky Pond, Sergei, Delport, Wayne, Muse, Spencer V., Scheffler, Konrad
Publicado 2010

Suppressors of RNAi from plant viruses are subject to episodic positive selection

por Murray, Gemma G. R., Kosakovsky Pond, Sergei L., Obbard, Darren J.
Publicado 2013

Neutral Theory and Rapidly Evolving Viral Pathogens

por Frost, Simon D W, Magalis, Brittany Rife, Kosakovsky Pond, Sergei L
Publicado 2018

Equiprobable discrete models of site-specific substitution rates underestimate the extent of rate variability

por Mannino, Frank, Wisotsky, Sadie, Kosakovsky Pond, Sergei L., Muse, Spencer V.
Publicado 2020

A First Look at ARFome: Dual-Coding Genes in Mammalian Genomes

por Chung, Wen-Yu, Wadhawan, Samir, Szklarczyk, Radek, Pond, Sergei Kosakovsky, Nekrutenko, Anton
Publicado 2007

Evaluation of global HIV/SIV envelope gp120 RNA structure and evolution within and among infected hosts

por Rife Magalis, Brittany, Kosakovsky Pond, Sergei L, Summers, Michael F, Salemi, Marco
Publicado 2018

Coronavirus Resistance Database (CoV-RDB): SARS-CoV-2 susceptibility to monoclonal antibodies, convalescent plasma, and plasma from vaccinated persons

por Tzou, Philip L., Tao, Kaiming, Pond, Sergei L. Kosakovsky, Shafer, Robert W.
Publicado 2022

The evolution of BDNF is defined by strict purifying selection and prodomain spatial coevolution, but what does it mean for human brain disease?

por Lucaci, Alexander G., Notaras, Michael J., Kosakovsky Pond, Sergei L., Colak, Dilek
Publicado 2022

Benchmarking Multi-Rate Codon Models

por Delport, Wayne, Scheffler, Konrad, Gravenor, Mike B., Muse, Spencer V., Kosakovsky Pond, Sergei
Publicado 2010

Using HIV Transmission Networks to Investigate Community Effects in HIV Prevention Trials

por Wertheim, Joel O., Kosakovsky Pond, Sergei L., Little, Susan J., De Gruttola, Victor
Publicado 2011

Modeling HIV-1 Drug Resistance as Episodic Directional Selection

por Murrell, Ben, de Oliveira, Tulio, Seebregts, Chris, Kosakovsky Pond, Sergei L., Scheffler, Konrad
Publicado 2012

Synonymous Site-to-Site Substitution Rate Variation Dramatically Inflates False Positive Rates of Selection Analyses: Ignore at Your Own Peril

por Wisotsky, Sadie R, Kosakovsky Pond, Sergei L, Shank, Stephen D, Muse, Spencer V
Publicado 2020

Contrast-FEL—A Test for Differences in Selective Pressures at Individual Sites among Clades and Sets of Branches

por Kosakovsky Pond, Sergei L, Wisotsky, Sadie R, Escalante, Ananias, Magalis, Brittany Rife, Weaver, Steven
Publicado 2020