Inferring Aggregated Functional Traits from Metagenomic Data Using Constrained Non-negative Matrix Factorization: Application to Fiber Degradation in the Human Gut Microbiota

por Raguideau, Sébastien, Plancade, Sandra, Pons, Nicolas, Leclerc, Marion, Laroche, Béatrice
Publicado 2016

StrainFLAIR: strain-level profiling of metagenomic samples using variation graphs

por Da Silva, Kévin, Pons, Nicolas, Berland, Magali, Plaza Oñate, Florian, Almeida, Mathieu, Peterlongo, Pierre
Publicado 2021

Capturing the most wanted taxa through cross-sample correlations

por Almeida, Mathieu, Pop, Mihai, Le Chatelier, Emmanuelle, Prifti, Edi, Pons, Nicolas, Ghozlane, Amine, Ehrlich, S Dusko
Publicado 2016

Benchmarking second and third-generation sequencing platforms for microbial metagenomics

por Meslier, Victoria, Quinquis, Benoit, Da Silva, Kévin, Plaza Oñate, Florian, Pons, Nicolas, Roume, Hugo, Podar, Mircea, Almeida, Mathieu
Publicado 2022

The bacterial species profiles of the lingual and salivary microbiota differ with basic tastes sensitivity in human

por Licandro, Hélène, Truntzer, Caroline, Fromentin, Sébastien, Morabito, Christian, Quinquis, Benoit, Pons, Nicolas, Martin, Christophe, Blottière, Hervé M., Neyraud, Eric
Publicado 2023

Mediterranean diet consumption affects the endocannabinoid system in overweight and obese subjects: possible links with gut microbiome, insulin resistance and inflammation

por Tagliamonte, Silvia, Laiola, Manolo, Ferracane, Rosalia, Vitale, Marilena, Gallo, Maria A., Meslier, Victoria, Pons, Nicolas, Ercolini, Danilo, Vitaglione, Paola
Publicado 2021

Indole, a Signaling Molecule Produced by the Gut Microbiota, Negatively Impacts Emotional Behaviors in Rats

por Jaglin, Mathilde, Rhimi, Moez, Philippe, Catherine, Pons, Nicolas, Bruneau, Aurélia, Goustard, Bénédicte, Daugé, Valérie, Maguin, Emmanuelle, Naudon, Laurent, Rabot, Sylvie
Publicado 2018

Transcriptomic and Ultrastructural Signatures of K(+)-Induced Aggregation in Phytophthora parasitica Zoospores

por Bassani, Ilaria, Rancurel, Corinne, Pagnotta, Sophie, Orange, François, Pons, Nicolas, Lebrigand, Kevin, Panabières, Franck, Counillon, Laurent, Noblin, Xavier, Galiana, Eric
Publicado 2020

Diet and gut microbiome interactions of relevance for symptoms in irritable bowel syndrome

por Tap, Julien, Störsrud, Stine, Le Nevé, Boris, Cotillard, Aurélie, Pons, Nicolas, Doré, Joël, Öhman, Lena, Törnblom, Hans, Derrien, Muriel, Simrén, Magnus
Publicado 2021

Genomic Characterization of the Taylorella Genus

por Hébert, Laurent, Moumen, Bouziane, Pons, Nicolas, Duquesne, Fabien, Breuil, Marie-France, Goux, Didier, Batto, Jean-Michel, Laugier, Claire, Renault, Pierre, Petry, Sandrine
Publicado 2012

Siropins, novel serine protease inhibitors from gut microbiota acting on human proteases involved in inflammatory bowel diseases

por Mkaouar, Héla, Akermi, Nizar, Mariaule, Vincent, Boudebbouze, Samira, Gaci, Nadia, Szukala, Florette, Pons, Nicolas, Marquez, Josan, Gargouri, Ali, Maguin, Emmanuelle, Rhimi, Moez
Publicado 2016

Identification of New Factors Modulating Adhesion Abilities of the Pioneer Commensal Bacterium Streptococcus salivarius

por Couvigny, Benoit, Kulakauskas, Saulius, Pons, Nicolas, Quinquis, Benoit, Abraham, Anne-Laure, Meylheuc, Thierry, Delorme, Christine, Renault, Pierre, Briandet, Romain, Lapaque, Nicolas, Guédon, Eric
Publicado 2018

Quality control of microbiota metagenomics by k-mer analysis

por Plaza Onate, Florian, Batto, Jean-Michel, Juste, Catherine, Fadlallah, Jehane, Fougeroux, Cyrielle, Gouas, Doriane, Pons, Nicolas, Kennedy, Sean, Levenez, Florence, Dore, Joel, Ehrlich, S Dusko, Gorochov, Guy, Larsen, Martin
Publicado 2015

Long-term diosmectite use does not alter the gut microbiota in adults with chronic diarrhea

por Da Silva, Kévin, Guilly, Susie, Thirion, Florence, Le Chatelier, Emmanuelle, Pons, Nicolas, Roume, Hugo, Quinquis, Benoît, Ehrlich, Stanislav D., Bekkat, Nassima, Mathiex-Fortunet, Hélène, Sokol, Harry, Doré, Joël
Publicado 2022

Characterizing isomiR variants within the microRNA‐34/449 family

por Mercey, Olivier, Popa, Alexandra, Cavard, Amélie, Paquet, Agnès, Chevalier, Benoît, Pons, Nicolas, Magnone, Virginie, Zangari, Joséphine, Brest, Patrick, Zaragosi, Laure‐Emmanuelle, Ponzio, Gilles, Lebrigand, Kevin, Barbry, Pascal, Marcet, Brice
Publicado 2017

Changes in Gut Microbiota of Patients with Atopic Dermatitis During Balneotherapy

por Thirion, Florence, Guilly, Susie, Fromentin, Sébastien, Plaza Oñate, Florian, Alvarez, Anne-Sophie, Le Chatelier, Emmanuelle, Pons, Nicolas, Levenez, Florence, Quinquis, Benoît, Ehrlich, Stanislav, Doré, Joel, Martin, Richard, Seité, Sophie
Publicado 2022

Dietary modulation of the gut microbiota – a randomised controlled trial in obese postmenopausal women

por Brahe, Lena K., Le Chatelier, Emmanuelle, Prifti, Edi, Pons, Nicolas, Kennedy, Sean, Blædel, Trine, Håkansson, Janet, Dalsgaard, Trine Kastrup, Hansen, Torben, Pedersen, Oluf, Astrup, Arne, Ehrlich, S. Dusko, Larsen, Lesli H.
Publicado 2015

Changes of the human gut microbiome induced by a fermented milk product

por Veiga, Patrick, Pons, Nicolas, Agrawal, Anurag, Oozeer, Raish, Guyonnet, Denis, Brazeilles, Rémi, Faurie, Jean-Michel, van Hylckama Vlieg, Johan E. T., Houghton, Lesley A., Whorwell, Peter J., Ehrlich, S. Dusko, Kennedy, Sean P.
Publicado 2014

CDC20B is required for deuterosome-mediated centriole production in multiciliated cells

por Revinski, Diego R., Zaragosi, Laure-Emmanuelle, Boutin, Camille, Ruiz-Garcia, Sandra, Deprez, Marie, Thomé, Virginie, Rosnet, Olivier, Gay, Anne-Sophie, Mercey, Olivier, Paquet, Agnès, Pons, Nicolas, Ponzio, Gilles, Marcet, Brice, Kodjabachian, Laurent, Barbry, Pascal
Publicado 2018